View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1505_high_36 (Length: 249)
Name: NF1505_high_36
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 37254134 - 37253909
Alignment:
| Q |
18 |
tgcatgacatttggttcgttaagttacattttttgcaatgttaaaaattaaaatacaaaaatgaatagtaaaatactagccaaagatagcggaaatggtc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37254134 |
tgcatgacatttggttcgttaagtaacattttttgcaatgttaaaaattaaaatacaaaaatgaatagtaaaatactagccaaagatagcggaaatggtc |
37254035 |
T |
|
| Q |
118 |
tattttaaaaatatgataatatttcatatcatatttatttaaataaattaacatttgactgaaatgtatt-nnnnnnngtcatctgactagctttttctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37254034 |
tattttaaaaatatgataatatttcatatcatatttatttaaataaattaacatttgactgaaatgtattaaaaaaaagtcatctgactagctttttctt |
37253935 |
T |
|
| Q |
217 |
tgaaaatacttatttgagcacctatg |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37253934 |
tgaaaatacttatttgagcacctatg |
37253909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University