View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_42 (Length: 232)
Name: NF1505_high_42
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 31335895 - 31336124
Alignment:
| Q |
6 |
aactgtgttattcataattccacttatttgactcatgaattagttgtatctgttatatatcaaattattttagaattgtgtagaaattatagatattatc |
105 |
Q |
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| T |
31335895 |
aactgtgttattcataattccacttatttgactcatgaattagttgtatctgttatatatcaaattattttagaattgtgtagaaattatagatattatc |
31335994 |
T |
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| Q |
106 |
tactctatctatctcataataaatgttttatattcaaaaataaataaatgtaagtcccaaaataagtgt---tatgacttactgcatgttttttatccga |
202 |
Q |
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| T |
31335995 |
ttctctatctatctcataataaatgttttatattcaaaaataaataaatgtaagtcccaaaataagtgttactatgacttactgcatgttttttatcaga |
31336094 |
T |
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| Q |
203 |
aagattctagcagtcaaactcacatactaa |
232 |
Q |
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| T |
31336095 |
aagattctagcagccaaactcacatactaa |
31336124 |
T |
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