View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_43 (Length: 230)
Name: NF1505_high_43
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 1556769 - 1556573
Alignment:
| Q |
16 |
cagacgaaaaactcccttctccaactaaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagat |
115 |
Q |
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| T |
1556769 |
cagacgaaaaactcccttctccaactaaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagat |
1556670 |
T |
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| Q |
116 |
ttctacaccatctatgcacatgacccatcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataa |
212 |
Q |
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| T |
1556669 |
ttctacaccatctatgcacatgacccatcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataa |
1556573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 1460180 - 1460350
Alignment:
| Q |
42 |
aaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagatttctacaccatctatgcacatgaccc |
141 |
Q |
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| T |
1460180 |
aaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagatttctacaccatctatgcacatgaccc |
1460279 |
T |
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| Q |
142 |
atcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataa |
212 |
Q |
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| T |
1460280 |
atcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataa |
1460350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 1529070 - 1529018
Alignment:
| Q |
47 |
acctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgattt |
99 |
Q |
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| T |
1529070 |
acctttcaatttgctcatatctcaatttccaattcactccaacaagtcgattt |
1529018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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