View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_49 (Length: 213)
Name: NF1505_high_49
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 414636 - 414457
Alignment:
| Q |
13 |
atcatcaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
112 |
Q |
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| T |
414636 |
atcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
414537 |
T |
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| Q |
113 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagct |
192 |
Q |
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| T |
414536 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagct |
414457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 37211616 - 37211762
Alignment:
| Q |
45 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
144 |
Q |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
145 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagc |
191 |
Q |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagc |
37211762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 37217299 - 37217444
Alignment:
| Q |
46 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
145 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| || ||| |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
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| Q |
146 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagc |
191 |
Q |
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|||||||||||| ||| |||||||||||| | ||| |||||||| |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagc |
37217444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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