View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_high_5 (Length: 456)

Name: NF1505_high_5
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_high_5
NF1505_high_5
[»] chr3 (1 HSPs)
chr3 (18-449)||(36744296-36744727)
[»] chr2 (2 HSPs)
chr2 (29-88)||(42688089-42688148)
chr2 (28-85)||(42693651-42693708)
[»] chr8 (12 HSPs)
chr8 (29-88)||(6263797-6263856)
chr8 (29-87)||(6451379-6451437)
chr8 (29-87)||(6457568-6457626)
chr8 (28-86)||(6289527-6289585)
chr8 (28-86)||(6321909-6321967)
chr8 (28-86)||(6332483-6332541)
chr8 (28-84)||(6275040-6275096)
chr8 (28-83)||(6391484-6391539)
chr8 (28-84)||(6363675-6363731)
chr8 (28-83)||(6410646-6410701)
chr8 (29-82)||(6370575-6370628)
chr8 (28-84)||(6424566-6424622)
[»] chr5 (1 HSPs)
chr5 (18-84)||(9604084-9604150)
[»] chr7 (1 HSPs)
chr7 (29-90)||(46710884-46710945)
[»] chr1 (2 HSPs)
chr1 (38-88)||(47128441-47128491)
chr1 (29-90)||(36924580-36924641)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 36744727 - 36744296
Alignment:
Q  18 gaatcacacatggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagacttatcagctgtaaatttcaaataattaattac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744727 gaatcacacatggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagacttatcagctgtaaatttcaaataattaattac 36744628  T
Q  118 ttgagagtaaagtaattagtcaaaaagacaaaagttatacaactgagttagattagcaaaccttgaatgacatggggaggtggatacttgaggaaatttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744627 ttgagagtaaagtaattagtcaaaaagacaaaagttatacaactgagttagattagcaaaccttgaatgacatggggaggtggatacttgaggaaatttt 36744528  T
Q  218 caccatcagttcggaagatttccttcaccattgctatgggactaatagcactgatgatatctgtcggtagcttaactcctccttcgaagaggcaacgaac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744527 caccatcagttcggaagatttccttcaccattgctatgggactaatagcactgatgatatctgtcggtagcttaactcctccttcgaagaggcaacgaac 36744428  T
Q  318 ttcttcgaaattatcaaactctttgtcgaagtcnnnnnnnttgcgaaatttaggtatcacattttgatttaaacctttcaatccaaatccaaggaagtca 417  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744427 ttcttcgaaattatcaaactctttgtcgaagtcaaaaaaattgcgaaatttaggtatcacattttgatttaaacctttcaatccaaatccaaggaagtca 36744328  T
Q  418 gcttgcttcaagtgaccaaaaacttcatctct 449  Q
    ||||||||||||||||||||||||||||||||    
T  36744327 gcttgcttcaagtgaccaaaaacttcatctct 36744296  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 42688148 - 42688089
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagactta 88  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  42688148 ggatttacaccagcaagcatttctcttgcaaactcttcatctgtcatccatgcagactta 42688089  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 42693651 - 42693708
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagac 85  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42693651 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 42693708  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 6263797 - 6263856
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagactta 88  Q
    ||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||    
T  6263797 ggatttacaccagcaagaatctctcttccaaattcatcatcagtcatccatgcagactta 6263856  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 6451379 - 6451437
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagactt 87  Q
    |||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||    
T  6451379 ggatttacaccagcaagcatctctcttccaaattcttcatcagtattccatgcagactt 6451437  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 6457568 - 6457626
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagactt 87  Q
    |||||||||||||||| ||| |||||| ||||||||||||| |||||||||||||||||    
T  6457568 ggatttacaccagcaaccatctctcttccaaattcttcatctgtcatccatgcagactt 6457626  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 6289527 - 6289585
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagact 86  Q
    |||||| |||||||||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  6289527 tggattcacaccagcaatcatctctcttgtaaattcttcatcagtcatccatccagact 6289585  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 6321909 - 6321967
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagact 86  Q
    |||||| |||||||||| ||| || |||||||||||||||||||||||||| |||||||    
T  6321909 tggattcacaccagcaatcatctcccttgcaaattcttcatcagtcatccacgcagact 6321967  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 6332483 - 6332541
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagact 86  Q
    |||||| |||||||||| ||| || |||||||||||| |||||||||||||||||||||    
T  6332483 tggattcacaccagcaatcatctcccttgcaaattctccatcagtcatccatgcagact 6332541  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 6275040 - 6275096
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcaga 84  Q
    ||||||||||||||||| ||| ||||||| ||||||||| |||||||||||| ||||    
T  6275040 tggatttacaccagcaatcatctctcttgtaaattcttcgtcagtcatccatccaga 6275096  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 6391484 - 6391539
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcag 83  Q
    |||||| |||||||||| ||| || ||||||||||| |||||||||||||||||||    
T  6391484 tggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 6391539  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 6363675 - 6363731
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcaga 84  Q
    |||||| || ||||||| ||| || ||||||||||| ||||||||||||||||||||    
T  6363675 tggattcaccccagcaatcatctcccttgcaaattcctcatcagtcatccatgcaga 6363731  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 6410646 - 6410701
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcag 83  Q
    |||||| ||||||||||  || |||||||| ||||| |||||||||||||||||||    
T  6410646 tggattcacaccagcaattatctctcttgcgaattcctcatcagtcatccatgcag 6410701  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 6370575 - 6370628
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgca 82  Q
    ||||| |||||||||| ||| | |||||||||||| ||||||| ||||||||||    
T  6370575 ggattcacaccagcaatcatctgtcttgcaaattcctcatcagccatccatgca 6370628  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 6424566 - 6424622
Alignment:
Q  28 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcaga 84  Q
    |||||| || ||||||| ||| || ||||||||||| |||||||||||||| |||||    
T  6424566 tggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 6424622  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9604150 - 9604084
Alignment:
Q  18 gaatcacacatggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcaga 84  Q
    |||||||||| || ||||| ||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  9604150 gaatcacacaagggtttactccagcaaccatctctcttccaaattcttcatcagtcatccatgcaga 9604084  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 46710884 - 46710945
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagacttatc 90  Q
    |||||||||||||| ||||||||||| |||||||||||||||||  |||||||||| |||||    
T  46710884 ggatttacaccagccagcatttctctagcaaattcttcatcagttctccatgcagatttatc 46710945  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 47128441 - 47128491
Alignment:
Q  38 ccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagactta 88  Q
    |||||||||||||||||| |||| || ||||||||| ||||||||| ||||    
T  47128441 ccagcaagcatttctcttccaaactcctcatcagtcctccatgcagtctta 47128491  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 36924641 - 36924580
Alignment:
Q  29 ggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagacttatc 90  Q
    |||||||||||||| ||||| || || || ||||||||||||||  |||||||||| |||||    
T  36924641 ggatttacaccagccagcatctccctagcgaattcttcatcagttctccatgcagatttatc 36924580  T

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