View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_high_6 (Length: 449)
Name: NF1505_high_6
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 6415269 - 6414845
Alignment:
| Q |
11 |
cacagattgtacatggatagaataaagcgccacaacatgcgatatgctttcaaattccaaaactcacacgggcagctgtactaataactatgctagctgg |
110 |
Q |
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| T |
6415269 |
cacagattgtacatggatagaataaagcgccacaacatgcgatatgctttcaaattccaaaactcacacgggcagctgtactaataactatgctagctgg |
6415170 |
T |
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| Q |
111 |
gattcacttcatatttccttcaaattcacaacatcaatgtctttaacaatagtactattttttaaactattgtcacgtacataaattattactacattca |
210 |
Q |
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| T |
6415169 |
gattcacttcatatttccttcaaattcacaacatcaatgtctttaacaatagtactattttttaaactattgtcacgtacataaattattactacattca |
6415070 |
T |
|
| Q |
211 |
agctgactatactgtttgtacattaattaattttgatccctgagtgaggttgctttgataactttgtgaaatttcttagtagtatcatccaagaatcacc |
310 |
Q |
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| T |
6415069 |
agctgactatactgtttgtacattaattaattttggtccttgagtgaggttgctttgataactttgtgaaatttcttagtagtatcatccaagaatcacc |
6414970 |
T |
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| Q |
311 |
atgagttgtcaaaaacattaacaagaacaagttgtatcctttcatatctcaaggtcacacgaacgtttatcctgttaaattaaataatcttatgccctgc |
410 |
Q |
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| T |
6414969 |
atgagttgtcaaaaacattaacaagaacaagttgtatcctttcatatctcaaggtcacacgaacgtttatcctgttaaattaaataaccttatgccctgc |
6414870 |
T |
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| Q |
411 |
tcaaaattcctacaatgtacgtact |
435 |
Q |
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| T |
6414869 |
ccaaaattcctacaatgtacgtact |
6414845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 303 - 430
Target Start/End: Original strand, 23287917 - 23288044
Alignment:
| Q |
303 |
gaatcaccatgagttgtcaaaaacattaacaagaacaagttgtatcctttcatatctcaaggtcacacgaacgtttatcctgttaaattaaataatctta |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23287917 |
gaatcaccatgagttgtcaaaaacattaacaagaacaaattgtatcctttcatatctcaaggtcacacgaacgtttatcctgttaaattaaataacctta |
23288016 |
T |
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| Q |
403 |
tgccctgctcaaaattcctacaatgtac |
430 |
Q |
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| T |
23288017 |
tgccctgcccaaaattcctacaatgtac |
23288044 |
T |
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