View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_10 (Length: 427)
Name: NF1505_low_10
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 22 - 411
Target Start/End: Original strand, 34907851 - 34908244
Alignment:
| Q |
22 |
gtgtgaagagaagctccatccatagactcgcaatttcttttatttatttgagacactcttttgtattttaaggactcccaatgtgccgctctttggtttt |
121 |
Q |
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| T |
34907851 |
gtgtgaagagaagctccatccatagactcgcaatttcttttatttatttcagtcactcttttgtattttaaggactcccaatgtgccgctctttggtttt |
34907950 |
T |
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| Q |
122 |
tgatctaaattttttcgagcttcttgcattaatc----gaatcattttagctgaacccctttttctcaaatttacgtcgcaccaagtcgttatattacct |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34907951 |
tgatctaaattttttcgagcttcttgcattaattaattgaatcattttagctgaacccctttttctcaaatttacgtcgcaccaattcgttatattacct |
34908050 |
T |
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| Q |
218 |
taatagttggtcgatttccggccaccaatgctttctcttctcaaatcagtttctaaggtttacaaatcagctacaacttctctacataaagatgctgatt |
317 |
Q |
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| T |
34908051 |
taatagttggtcgatttccggccaccaatgctttctcttctcaaatcagtttctaagttttacaaatcagctacaacttctctacataaagatgctgatt |
34908150 |
T |
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| Q |
318 |
tcaatgctttattcaactcctgcgtcaatgttaatgctactaagaagcttcatgctcttcttctggtatttggaaaatctcaaaacattgtttt |
411 |
Q |
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| T |
34908151 |
tcaatgctttattcaactcctgcgtcaatgttaatgctactaagaagcttcatgctcttcttctggtatttggaaaatctcaaaacattgtttt |
34908244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 8574875 - 8574780
Alignment:
| Q |
114 |
ttggtttttgatctaaattttttcgagcttcttgcattaatcgaatcattttagctgaacccctttttctcaaatttacgtcgcaccaagtcgttat |
210 |
Q |
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| T |
8574875 |
ttggtttttgatctaaattttttcgaacttcttgcattaactgaatcattttagctgaacccc-ttttctcaaagttacgtcgcaccaagtcgttat |
8574780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 8574996 - 8574910
Alignment:
| Q |
22 |
gtgtgaagagaagctccatccatagactcgcaatttcttttatttatttgagacactcttttgtattttaaggactcccaatgtgcc |
108 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
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| T |
8574996 |
gtgtgaagagatgctccagccatagactcacaatttcttttatttatttcagatattcttttgtattttaaggactcccaatgtgcc |
8574910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 8604982 - 8604886
Alignment:
| Q |
114 |
ttggtttttgatctaaatttttt-cgagcttcttgcattaatcgaatcattttagctgaacccctttttctcaaatttacgtcgcaccaagtcgttat |
210 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
8604982 |
ttggtttttgatctaaattttttacgagcttcttggattaacggaatcattttagctgaacccc-ttttctcaaagttatgtcgcaccaagtcgttat |
8604886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 8605103 - 8605017
Alignment:
| Q |
22 |
gtgtgaagagaagctccatccatagactcgcaatttcttttatttatttgagacactcttttgtattttaaggactcccaatgtgcc |
108 |
Q |
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|||||||||| || ||| |||||||||| | |||||||||||||||| |||| | |||||||||||||||| |||||||||||| |
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| T |
8605103 |
gtgtgaagagttgcaccagccatagactcaaagtttcttttatttatttcagactttgttttgtattttaaggattcccaatgtgcc |
8605017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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