View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_12 (Length: 398)
Name: NF1505_low_12
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 5347302 - 5346931
Alignment:
| Q |
17 |
acattcatcattcttcactctcttactcactcattttcaacaatctttgtaaccccaaaacccctttttcactcctccatcaacacctccctcaccttct |
116 |
Q |
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| T |
5347302 |
acattcatcattcttcactctcttactcactcattttcaacaatctttgtaaccccaaaacccctttttcactcctccatcaacacctccctcaccttct |
5347203 |
T |
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| Q |
117 |
tcattgcatgaaacaaaatggtattgttttcgattcgaattcgttcaataccctccttaattttcttatcaaatttggtgtttctcataacaataatagt |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347202 |
tcattccatgaaacaaaatggtattgttttcgattcgaattcgttcaataccctccttaattttcttatcaaatttggtgtttctcataacaataatagt |
5347103 |
T |
|
| Q |
217 |
aaaaactttcactttgttattgatattttggattatattcaaacacaaaatcttcatcctgttggtactacaccttttatttataattctctgttaattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5347102 |
aaaaactttcactttgttattgatattttggattatattcaaacacaaaatcttcatcctgttgatactacaccttttatttataattctctgttaattg |
5347003 |
T |
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| Q |
317 |
cttctataaagaataatcaaattccacttgctttgtcaatttttaataatattatgacacttggtgatgatg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347002 |
cttctataaagaataatcaaattccacttgctttgtcaatttttaataatattatgacacttggtgatgatg |
5346931 |
T |
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