View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_13 (Length: 397)

Name: NF1505_low_13
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_low_13
NF1505_low_13
[»] chr4 (1 HSPs)
chr4 (12-380)||(27692397-27692765)
[»] chr3 (1 HSPs)
chr3 (45-299)||(9159602-9159856)
[»] chr1 (27 HSPs)
chr1 (237-332)||(8956225-8956320)
chr1 (38-164)||(10901592-10901718)
chr1 (46-161)||(9463967-9464081)
chr1 (46-161)||(9488561-9488676)
chr1 (237-299)||(8942219-8942281)
chr1 (220-274)||(11028478-11028532)
chr1 (237-346)||(8932303-8932412)
chr1 (41-164)||(9234040-9234163)
chr1 (112-167)||(9350296-9350351)
chr1 (63-166)||(9453803-9453906)
chr1 (220-274)||(11011075-11011129)
chr1 (237-346)||(8920898-8921007)
chr1 (235-299)||(9233905-9233969)
chr1 (63-155)||(9432827-9432919)
chr1 (238-274)||(10903629-10903665)
chr1 (112-167)||(9318268-9318323)
chr1 (112-167)||(9319979-9320034)
chr1 (232-302)||(9320099-9320169)
chr1 (232-302)||(9350416-9350486)
chr1 (220-274)||(10914774-10914828)
chr1 (220-274)||(10979509-10979563)
chr1 (220-274)||(11004893-11004947)
chr1 (45-91)||(11007738-11007784)
chr1 (205-242)||(9056731-9056768)
chr1 (205-274)||(9142742-9142811)
chr1 (229-274)||(11033375-11033420)
chr1 (227-299)||(9486035-9486107)
[»] chr6 (1 HSPs)
chr6 (124-176)||(15927165-15927217)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 27692397 - 27692765
Alignment:
Q  12 attctctatgtaacttttgttcttttttctacctgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgcttccgatgttc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  27692397 attctctatgtaacttttgttcttttttctacctgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgtttccaatgttc 27692496  T
Q  112 ttgtataacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgccaaaccaaagt 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692497 ttgtataacaactcaggagccatgtaccccattgttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgccaaaccaaagt 27692596  T
Q  212 cagatatctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaat 311  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692597 cagatatctttgggtcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaat 27692696  T
Q  312 tccacgggaaattccaagagaaatgtcgtaaattttctcatagcttaacgacgacaagtgtccttgctc 380  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  27692697 tccacgggaaattccaagagaaatgtcgtagattttctcgtagcttaacgacgacaagtgtccttgctc 27692765  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 299
Target Start/End: Original strand, 9159602 - 9159856
Alignment:
Q  45 tgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgtatcccatt 144  Q
    |||||||||||| |  | |||||||||||||||||||||||| ||||  || |  |  || || || ||||| |||||||| |||||||| || || |||    
T  9159602 tgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataaccaatt 9159701  T
Q  145 gttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgccaaaccaaagtcagatatctttggatcaaaattctcgtcaagaa 244  Q
    ||||||||||| || |||||| ||| |||||| |  ||  |  | || | ||| || | |||||||||||| | ||| ||   ||| |||||||||||||    
T  9159702 gttcctcttgctgcagttaaatttacaatactattgtcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaa 9159801  T
Q  245 gaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 299  Q
    | |||||||| || || |||||||| || | ||||||||||||||| ||||||||    
T  9159802 gtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatg 9159856  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 8956225 - 8956320
Alignment:
Q  237 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagaga 332  Q
    ||||||||||||||||||||| || |||||||| ||||  ||||||||||||||||||||||| || ||   ||||||||| | || |||||||||    
T  8956225 gtcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagaga 8956320  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 10901592 - 10901718
Alignment:
Q  38 ttctacctgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgta 137  Q
    |||||| |||||| ||||| | || ||||||||||||||| ||||||||||||||||| ||  | ||||  ||  |||| || || ||||| ||||||||    
T  10901592 ttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacatttctgtagaataattcaggggccatgta 10901691  T
Q  138 tcccattgttcctcttgccgctgttaa 164  Q
    ||| || ||||||||||| ||||||||    
T  10901692 tccaatggttcctcttgctgctgttaa 10901718  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 9463967 - 9464081
Alignment:
Q  46 gccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgtatcccattg 145  Q
    ||||||||||||| || ||||||||  ||||||||||| |||||||  || |  | ||| |||||||| || |||||||| || |||||||||||||| |    
T  9463967 gccatttccattaacaacattccaag-ctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatag 9464065  T
Q  146 ttcctcttgccgctgt 161  Q
    |||||||||| |||||    
T  9464066 ttcctcttgcagctgt 9464081  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 9488561 - 9488676
Alignment:
Q  46 gccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgtatcccattg 145  Q
    ||||||||||||| || ||||||||| ||||||||||| |||||||  || |  | ||| || ||||| || ||||| || || |||||||||||||| |    
T  9488561 gccatttccattaacaacattccaaagctataaacatctgctttgtacgatactcctccaatattcttatagaacaattctggtgccatgtatcccatag 9488660  T
Q  146 ttcctcttgccgctgt 161  Q
    |||||||||| |||||    
T  9488661 ttcctcttgcagctgt 9488676  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 8942219 - 8942281
Alignment:
Q  237 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 299  Q
    ||||||||| ||||||||||| || |||||||| ||||  |||||||||||||||||||||||    
T  8942219 gtcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatg 8942281  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 11028532 - 11028478
Alignment:
Q  220 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  11028532 tttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 11028478  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 8932303 - 8932412
Alignment:
Q  237 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatg 336  Q
    ||||||||| ||||||||||| || ||||| || ||||  ||||||||||||||||||||||| || ||   ||||||||| | || ||||||||| ||     
T  8932303 gtcaagaagtatgttatgaggcttgatatcgaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagagatatc 8932402  T
Q  337 tcgtaaattt 346  Q
    ||||| ||||    
T  8932403 tcgtacattt 8932412  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 9234163 - 9234040
Alignment:
Q  41 tacctgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgtatcc 140  Q
    |||||||||||||||| |  | |||||||||||| || |||||||||||||  || |  |  || || || ||||| ||||| |||||||||||||| ||    
T  9234163 tacctgccatttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacc 9234064  T
Q  141 cattgttcctcttgccgctgttaa 164  Q
    ||  |||||||||||||| |||||    
T  9234063 caaagttcctcttgccgcagttaa 9234040  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 9350296 - 9350351
Alignment:
Q  112 ttgtataacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagt 167  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||    
T  9350296 ttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaaagt 9350351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 9453906 - 9453803
Alignment:
Q  63 cattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgtatcccattgttcctcttgccgctgtt 162  Q
    ||||||||||||||| ||||| || ||||| || || || || || || | ||| ||||| |||||||||||||| || |||||||||||||| |||||     
T  9453906 cattccaaaactatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtc 9453807  T
Q  163 aaag 166  Q
    ||||    
T  9453806 aaag 9453803  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 11011075 - 11011129
Alignment:
Q  220 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||  ||||| || |||||||||||||||||||| ||||||||||||||||    
T  11011075 tttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 8920898 - 8921007
Alignment:
Q  237 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatg 336  Q
    ||||||||| ||||||||||| || || ||||| ||||  |||||||||||||| |||||||| || ||   ||||||||| | || ||||||||| ||     
T  8920898 gtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaatttgcatgtcacagccttgatgcaaataagcaattccacgtgcaactccaagagatatc 8920997  T
Q  337 tcgtaaattt 346  Q
    ||||| ||||    
T  8920998 tcgtacattt 8921007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 9233969 - 9233905
Alignment:
Q  235 tcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 299  Q
    ||||| |||||||| |||||||| || |||||||| ||||  |||||||| ||||||||||||||    
T  9233969 tcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatg 9233905  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 9432919 - 9432827
Alignment:
Q  63 cattccaaaactataaacatcagctttgtgagagatgcttccgatgttcttgtataacaactcaggagccatgtatcccattgttcctcttgc 155  Q
    ||||||||||||||| ||||| || ||||| || || || || || || | ||| ||||| |||||||||||||| || ||||||||||||||    
T  9432919 cattccaaaactatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgc 9432827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 10903629 - 10903665
Alignment:
Q  238 tcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10903629 tcaagaagaatgttatgaggctttatatcaaagtgta 10903665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 9318323 - 9318268
Alignment:
Q  112 ttgtataacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagt 167  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| || || ||||||||    
T  9318323 ttgtagaacaattcaggagccatgtatccaattgttcctctagctgcagttaaagt 9318268  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 9319979 - 9320034
Alignment:
Q  112 ttgtataacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagt 167  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||| || ||||||||    
T  9319979 ttgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaagt 9320034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 9320099 - 9320169
Alignment:
Q  232 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaa 302  Q
    ||||| |||||||| |||||||| || || |||||||| || |  |||||||||||||| |||||||||||    
T  9320099 ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaa 9320169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 9350416 - 9350486
Alignment:
Q  232 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaa 302  Q
    ||||| |||||||| |||||||| || || |||||||| || |  |||||||||||||| |||||||||||    
T  9350416 ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaa 9350486  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 10914774 - 10914828
Alignment:
Q  220 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  10914774 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10914828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 10979509 - 10979563
Alignment:
Q  220 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  10979509 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10979563  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 11004947 - 11004893
Alignment:
Q  220 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  11004947 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 11004893  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 11007738 - 11007784
Alignment:
Q  45 tgccatttccattagcatcattccaaaactataaacatcagctttgt 91  Q
    |||||| ||||||| || ||| |||||||||||||||||||||||||    
T  11007738 tgccatctccattaacaacatcccaaaactataaacatcagctttgt 11007784  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 9056731 - 9056768
Alignment:
Q  205 ccaaagtcagatatctttggatcaaaattctcgtcaag 242  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9056731 ccaaagtcagatatctttggaataaaattctcgtcaag 9056768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 9142811 - 9142742
Alignment:
Q  205 ccaaagtcagatatctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||||||||||||||||  ||| ||||| ||||| ||||| ||||| || || |||||||| ||||    
T  9142811 ccaaagtcagatatctttggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgta 9142742  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 11033375 - 11033420
Alignment:
Q  229 aaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 274  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  11033375 aaattctcatcaagaaggatgttatgaggctttatgtcaaagtgta 11033420  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 9486107 - 9486035
Alignment:
Q  227 caaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 299  Q
    ||||||| ||||||||||||||||| ||||| || |||||||| || |  ||||||||  |||| ||||||||    
T  9486107 caaaattttcgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaatttgcataccacagccttgatg 9486035  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 15927217 - 15927165
Alignment:
Q  124 tcaggagccatgtatcccattgttcctcttgccgctgttaaagttaaaatact 176  Q
    ||||||||||||||||| || ||||||||||| || |||||||| | ||||||    
T  15927217 tcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatact 15927165  T

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