View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_17 (Length: 368)
Name: NF1505_low_17
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 19469720 - 19470066
Alignment:
| Q |
7 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatga |
106 |
Q |
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| T |
19469720 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatga |
19469819 |
T |
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| Q |
107 |
ttttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatc |
206 |
Q |
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| T |
19469820 |
ttttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatc |
19469919 |
T |
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| Q |
207 |
tagggaatattattagatgttttcacgttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
306 |
Q |
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| T |
19469920 |
tagagaatattattagatgttttcaggttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
19470019 |
T |
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| Q |
307 |
gctcatttggctcttcaggttcctgataggatttggtgggaggaagt |
353 |
Q |
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| T |
19470020 |
gctcatttggctcttcaggttcctgataggatttggttagaggaagt |
19470066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 47865596 - 47865355
Alignment:
| Q |
9 |
agatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgatt |
108 |
Q |
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| T |
47865596 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
47865497 |
T |
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| Q |
109 |
ttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatcta |
208 |
Q |
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| T |
47865496 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
47865397 |
T |
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| Q |
209 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
250 |
Q |
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| T |
47865396 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
47865355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 47864488 - 47864376
Alignment:
| Q |
242 |
aacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
341 |
Q |
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| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
47864389 |
T |
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| Q |
342 |
gtgggaggaagtg |
354 |
Q |
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|| |||||||||| |
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| T |
47864388 |
gttggaggaagtg |
47864376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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