View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_18 (Length: 345)
Name: NF1505_low_18
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 2111578 - 2111746
Alignment:
| Q |
17 |
accatcgaggttttgtggagaggatatgtttaagtcccagaatgatgaatcaatggctgttcttagcttagccattgatgatgac---------aacaac |
107 |
Q |
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| T |
2111578 |
accatcgaggttttgtggagaggatatgtttaagtcccagaatgatgaatcaatggctgttcttagcttagccattgatgatgacaacaacaagaacaac |
2111677 |
T |
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| Q |
108 |
aatgaa-----tgaagtgaagtgaagaggttttgtttttgttgaggtttaacctctctgttgcttatcc |
171 |
Q |
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| T |
2111678 |
aatgaatgaagtgaagtgaagtgaagaggttttgtttttgttgaggtttaacctctctgttgcttatcc |
2111746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 2111783 - 2111906
Alignment:
| Q |
206 |
ttgagtgaattttcccattttcttatatatttacattgtttcacnnnnnnnaattaacatttaccggcaaaacaaaaaagattttaaccgcagaacaata |
305 |
Q |
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| T |
2111783 |
ttgagtgaattttcccattttcttatatatttacattgtttcactttttttaattaacatttaccggcaaaacaaaaaagattttaaccgcagaacaata |
2111882 |
T |
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| Q |
306 |
attaccgatcagggatattcagat |
329 |
Q |
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| T |
2111883 |
attaccgatcagggatattcagat |
2111906 |
T |
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