View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_19 (Length: 343)
Name: NF1505_low_19
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 25740377 - 25740046
Alignment:
| Q |
1 |
gtgcgatccaaaaccaacaaataacggcagacaacatgtcaacataatcagtcacagtaaaaacaccgcgacaagttatcttactagttgaaaatctacc |
100 |
Q |
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| T |
25740377 |
gtgcgatccaaaaccaacaaataactgcagacaacatgttaacataatcagtcacagtaaaaacaccgcgacaagttatcttactagttgaaaatctacc |
25740278 |
T |
|
| Q |
101 |
cttcagctttagttgcctaggttcgatactcttatacaccggnnnnnnncatcgtgacaaatgtattattcgaagatatcagtcataaaacagtggcaat |
200 |
Q |
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| T |
25740277 |
cttcagctttagtggcctaggttcgatactcttatacaccggaaaaaaacatcgtgacaaatgtattattcgaagatataagtcataaaacagtggcaat |
25740178 |
T |
|
| Q |
201 |
tcaacacgnnnnnnnnacagtgataaattaacctttttgttgggacaaagacaaagacaaagacagtgacaagaattcaagactaaccactnnnnnnnca |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25740177 |
tcaacacg-gttttttacagtgataaattaacctttttgttgggacaaagacaaagacaaagacagtgacaagaattcaagactaaccactaaaaaaaca |
25740079 |
T |
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| Q |
301 |
acatgataacaaccgacttcgtcatgagaataa |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25740078 |
acatgataacaaccgacttcgtcatgagaataa |
25740046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25744077 - 25744026
Alignment:
| Q |
1 |
gtgcgatccaaaaccaacaaataacggcagacaacatgtcaacataatcagt |
52 |
Q |
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||||||||||||||||||||||| | ||||| ||||| | |||||||||||| |
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| T |
25744077 |
gtgcgatccaaaaccaacaaatatctgcagagaacatattaacataatcagt |
25744026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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