View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_22 (Length: 322)
Name: NF1505_low_22
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 53488122 - 53488411
Alignment:
| Q |
16 |
aatactttacatgcagagatttcaaggagtttaatagtaattgaaatagcttatcaccattattggcacaatttgtggatagaaaccgattcaactttgg |
115 |
Q |
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| T |
53488122 |
aatactttacatgcagagatttcaaggagtttaatagtgattgaaatagcttatcaccatcattggcacaatt-gtggatagaaaccgattcaactttgg |
53488220 |
T |
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| Q |
116 |
tggtgcatgcttttaagaatgctgctaaaattccttggttttactaatttgagtagttgttaaaatgcttccaatatttttgaacataataataactcaa |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53488221 |
tgatgcatgcttttaagaatgctgctaaaattccttggttttattaatttgagtagttgttaaaatgcttccaatatttttgaacataataataactcaa |
53488320 |
T |
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| Q |
216 |
atgacatagcttaaagaatgatggcaatcgaaagatggttnnnnnnnnntgcacacatatgttacaagtaataaactattaaaagttgtact |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
53488321 |
atgacatagcttaaagaatgatggcaatcgaaagatggtt-aaaaaaaatgcacacatattttacaggtaataaactagtaaaagttgtact |
53488411 |
T |
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