View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_23 (Length: 302)
Name: NF1505_low_23
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 11577262 - 11577025
Alignment:
| Q |
18 |
gcaagtggtttggttgatttgtatttgggtcatttgaaaggagtgaaattaaaagattttttccaacaagaatttgtctcttgagcatttaattgatagg |
117 |
Q |
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| T |
11577262 |
gcaagtggtttggttggtttgtatttaggtcatttgaaaggagcgaaattaacagattttttctaacaagaatttgtctcttgagcatttgattgatagg |
11577163 |
T |
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| Q |
118 |
attaagttgcattcttggtggtagtttaaggcgcaaagacctgctttcnnnnnnnactttagttcttggtggtgtaaccctttgtttgtggtggttattc |
217 |
Q |
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| T |
11577162 |
attaagctgcattcttggtggtggttgaaggcgcaaagacctactttccttttttactttagttcttgatggtgtaaccctttgtttttggtggttattc |
11577063 |
T |
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| Q |
218 |
cccaccttgatgttgttctcgtggttccttattctatc |
255 |
Q |
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| T |
11577062 |
cccaccttgatgttgttcttgtggttccttattctatc |
11577025 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 38402203 - 38402263
Alignment:
| Q |
36 |
ttgtatttgggtcatttgaaaggagtgaaattaaaagattttttccaacaagaatttgtct |
96 |
Q |
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| T |
38402203 |
ttgtatctaggtcatttgaaaggagtgaaattcatggattttctccaacaaaaatatgtct |
38402263 |
T |
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