View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_26 (Length: 287)
Name: NF1505_low_26
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 670019 - 670240
Alignment:
| Q |
4 |
cacaccagacaccatgcgccaccatgaggagctctccctcccacccta----ctaatgatttcttaaatctaaannnnnnnnnncaaattttattataac |
99 |
Q |
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| T |
670019 |
cacaccagacaccatgcgctaccatgaggagctctccctcccaacctagctactaatgatttcttaaatctacaaattttt---caaattttattataac |
670115 |
T |
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| Q |
100 |
cacaaaaagtaagttttatgtcaagaaccatacaaaatacaactatgctttgtccttatagtgatccgcatttgctcatcaagaaagagattacaacaag |
199 |
Q |
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| T |
670116 |
cacaaaaagcaaattttatgtcaagaaccatacaaaatacaactatgctttgtccttatagtgatctgcatttgctcatcaagaaagagattacaacaag |
670215 |
T |
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| Q |
200 |
tttggagcataacttaccttgacat |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
670216 |
tttggagcataacttaccttgacat |
670240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 670548 - 670601
Alignment:
| Q |
219 |
tgacatggttaccatggatagtcagggcactatatataggatgagtcagtaact |
272 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
670548 |
tgacttggttaccatggatagtcagggcactatatataggatgagtcactaact |
670601 |
T |
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