View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_29 (Length: 277)

Name: NF1505_low_29
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_low_29
NF1505_low_29
[»] chr1 (4 HSPs)
chr1 (16-266)||(5054001-5054251)
chr1 (18-129)||(46446033-46446147)
chr1 (16-129)||(46672020-46672136)
chr1 (166-195)||(46446193-46446222)
[»] chr8 (7 HSPs)
chr8 (16-141)||(9860662-9860787)
chr8 (16-130)||(9842021-9842135)
chr8 (162-266)||(9860829-9860933)
chr8 (162-266)||(9842188-9842292)
chr8 (31-130)||(9847066-9847165)
chr8 (167-266)||(9903122-9903221)
chr8 (28-69)||(27361021-27361062)
[»] chr5 (9 HSPs)
chr5 (16-130)||(225388-225502)
chr5 (16-123)||(39572392-39572499)
chr5 (16-142)||(4146547-4146673)
chr5 (162-256)||(39576559-39576653)
chr5 (18-123)||(39576400-39576505)
chr5 (16-76)||(2326337-2326397)
chr5 (16-53)||(4100463-4100500)
chr5 (167-217)||(3561339-3561389)
chr5 (167-215)||(225560-225608)
[»] chr3 (1 HSPs)
chr3 (162-263)||(7257009-7257110)
[»] scaffold0658 (1 HSPs)
scaffold0658 (28-69)||(2835-2876)
[»] chr6 (1 HSPs)
chr6 (16-56)||(112636-112676)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 5054251 - 5054001
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5054251 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatactttgtatgtggtatttcgtttgtggatcaac 5054152  T
Q  116 gatcaaatcatctttaaagtatctctacttggaagagacatcaaacacatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5054151 gatcaaatcatctttaaagtatctctacttggaagagacatcaaacacatacattttggttacaatgtcaagaccaaacatttgacaaagatcgagggca 5054052  T
Q  216 ttaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcat 266  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5054051 ttaccatgggcaattttgaggtatggcctcacgtcaacagtttagtttcat 5054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 46446033 - 46446147
Alignment:
Q  18 aatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtat---gtggtatttcgtttgtggatcaa 114  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||||| || |||||||||||| ||| ||||| |   |||||||||||||| ||| ||||    
T  46446033 aatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgagcttaataatttgtcttcggtggtatttcgtttttgggtcaa 46446132  T
Q  115 cgatcaaatcatctt 129  Q
    |||||||||||||||    
T  46446133 cgatcaaatcatctt 46446147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 46672136 - 46672020
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgc---ttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatc 112  Q
    |||||||||||  ||||||| |||||||| |||||||||||| |||||   ||| |||||| ||||||| ||||| |   |||||||| | |||||||||    
T  46672136 aaaatggtctctctatcatgcgatgggacattttgattatgtggctgcttgttgtggtcataagcttgaaattttttcgttggtattttgcttgtggatc 46672037  T
Q  113 aacgatcaaatcatctt 129  Q
    |||||| |||| |||||    
T  46672036 aacgattaaattatctt 46672020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 46446193 - 46446222
Alignment:
Q  166 acattttggttacaatgtcaagaccaaaca 195  Q
    ||||||||||||||||||||||||||||||    
T  46446193 acattttggttacaatgtcaagaccaaaca 46446222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 9860662 - 9860787
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaac 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||||| |||||| | ||||||| ||||| |||||||||||||||||||    
T  9860662 aaaatggtctctttatcatgagatgggaccttttgattatgtgtctgcttgtggtcaagagcttcagattttgtttgtggcatttcgtttgtggatcaac 9860761  T
Q  116 gatcaaatcatctttaaagtatctct 141  Q
     ||||||| |||||||||||| ||||    
T  9860762 catcaaattatctttaaagtagctct 9860787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 9842021 - 9842135
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaac 115  Q
    ||||||||||| | ||||||||||||||||||||||||||||  ||||||| ||||||  |||| ||| |  | |||||   ||||||||||||||||||    
T  9842021 aaaatggtctcttcatcatgagatgggaccttttgattatgtgtctgcttgtggtcataggcttaatactacggatgtgaagtttcgtttgtggatcaac 9842120  T
Q  116 gatcaaatcatcttt 130  Q
    |||||||| ||||||    
T  9842121 gatcaaattatcttt 9842135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 9860829 - 9860933
Alignment:
Q  162 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 261  Q
    |||| |||||||||||||||||||| || | ||| ||||||| ||| |||||||||    ||||  |||||||||||||| ||||| |||||||||||||    
T  9860829 acattcattttggttacaatgtcaaaactagacaattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacagtttagt 9860928  T
Q  262 ttcat 266  Q
    |||||    
T  9860929 ttcat 9860933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 9842188 - 9842292
Alignment:
Q  162 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 261  Q
    |||||||||||||||||||||| |||||||  || |||||||||||||||| ||||  | | ||||| ||||| ||||| | ||||  ||||||| ||||    
T  9842188 acatacattttggttacaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagt 9842287  T
Q  262 ttcat 266  Q
    |||||    
T  9842288 ttcat 9842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 9847066 - 9847165
Alignment:
Q  31 tcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatcttt 130  Q
    ||||||||||| |||||||| || | | | |||||| |||| ||   |||||||| ||  ||||||||||||||| |||||||| |||||||| ||||||    
T  9847066 tcatgagatggaaccttttgtttgtatgggtgcttgtggtcctggtattgatattatgagtgtggtatttcgtttttggatcaatgatcaaattatcttt 9847165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 9903122 - 9903221
Alignment:
Q  167 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcat 266  Q
    |||||| |||||||||| ||||||||||| |||| ||||||||||| ||||  | ||||  ||||| | ||||||  ||||  ||||||| |||||||||    
T  9903122 catttttgttacaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtctagtttcat 9903221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 27361021 - 27361062
Alignment:
Q  28 ttatcatgagatgggaccttttgattatgttgctgcttgcgg 69  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  27361021 ttatcatgagatgggaccttttgattacgaggctgcttgcgg 27361062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 225388 - 225502
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaac 115  Q
    ||||||||||| ||||||||||||  ||||||||| |||||| |||| |||||||| || ||||  |||||| | ||||| |||||||||||||||||||    
T  225388 aaaatggtctctttatcatgagatctgaccttttggttatgtggctgtttgcggtcgtgggcttagtattttttgtgtggcatttcgtttgtggatcaac 225487  T
Q  116 gatcaaatcatcttt 130  Q
    |||||||||||||||    
T  225488 gatcaaatcatcttt 225502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 39572392 - 39572499
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaac 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||| ||  || | ||||| || | |||||||||    
T  39572392 aaaatggtctccttatcatgagatgggaccttttgattatgttgctgcttgtggtaaccagcttgatattatgattgagatattttgtctatggatcaac 39572491  T
Q  116 gatcaaat 123  Q
    ||||||||    
T  39572492 gatcaaat 39572499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 4146547 - 4146673
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaac 115  Q
    ||||||||||| |||||||||||||||||||||||||| |    |||||||||| |||||| || ||||| ||| |||||| ||| |||| |||||||||    
T  4146547 aaaatggtctctttatcatgagatgggaccttttgattttccgactgcttgcggccatgagattcatattctgtgtgtggtgttttgtttctggatcaac 4146646  T
Q  116 gatcaaatcatctttaaagtatctcta 142  Q
     ||||||| ||| ||  ||||||||||    
T  4146647 catcaaattatccttcgagtatctcta 4146673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 39576559 - 39576653
Alignment:
Q  162 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagt 256  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||  |||  ||||||| ||||||| ||||  |||||||    
T  39576559 acatacattttagttacaatgtcaagaccaaacaattgacaaagattgagggcattgcctcgggtgattttgaagtatggcttcacactaacagt 39576653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 39576400 - 39576505
Alignment:
Q  18 aatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacga 117  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| | ||| |  ||||| ||||| ||  || | ||||||||||||||||||||||    
T  39576400 aatggtctctttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattatgagtgcgatatttcgtttgtggatcaacga 39576499  T
Q  118 tcaaat 123  Q
    ||||||    
T  39576500 tcaaat 39576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 2326397 - 2326337
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgag 76  Q
    ||||| ||||| |||||||||||||||||| ||||||||||| ||| |||| |||||||||    
T  2326397 aaaattgtctctttatcatgagatgggaccatttgattatgtggctacttgtggtcatgag 2326337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4100500 - 4100463
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgatt 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4100500 aaaatggtctctttatcatgagatgggaccttttgatt 4100463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 3561389 - 3561339
Alignment:
Q  167 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcatt 217  Q
    ||||||||||||||||||||||| | ||  ||||||||||| |||||||||    
T  3561389 cattttggttacaatgtcaagactagacgattgacaaagatagagggcatt 3561339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 225560 - 225608
Alignment:
Q  167 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggca 215  Q
    |||||| |||||||||||||||| | |||  ||||||||||||||||||    
T  225560 cattttagttacaatgtcaagactagacaactgacaaagattgagggca 225608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 7257009 - 7257110
Alignment:
Q  162 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 261  Q
    ||||| |||||||||| ||||| |||||||  || ||||| |||||||||| ||||   |||||||||||||| |||||| |||||  ||||||| ||||    
T  7257009 acatatattttggttataatgtgaagaccaggcaattgactaagattgaggacattggaatgggcaattttgaagtatggtctcacactaacagtctagt 7257108  T
Q  262 tt 263  Q
    ||    
T  7257109 tt 7257110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 2876 - 2835
Alignment:
Q  28 ttatcatgagatgggaccttttgattatgttgctgcttgcgg 69  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  2876 ttatcatgagatgggaccttttgattacgaggctgcttgcgg 2835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 112676 - 112636
Alignment:
Q  16 aaaatggtctcattatcatgagatgggaccttttgattatg 56  Q
    ||||||| ||| ||||||||||||||| |||||||||||||    
T  112676 aaaatggactctttatcatgagatggggccttttgattatg 112636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University