View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_3 (Length: 498)
Name: NF1505_low_3
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 91 - 498
Target Start/End: Complemental strand, 16660466 - 16660059
Alignment:
| Q |
91 |
gtgaatcaatggaatcattagctttctattttgaatgtctcgttggagcaaatcttagatggtaagtaaggagataaaatgtatagtgtactgtttatgc |
190 |
Q |
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| T |
16660466 |
gtgaatcaatggaatcattagctttctattttgaatgtctcgttggagcaaatcttagatggtaagtaaggagataaaatgtatagtgtactgtttatgc |
16660367 |
T |
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| Q |
191 |
acacacaggcacacgtatccatttaaatataagatcattgtttgttattatagaaaaaattgttttaatcgggagtaaatttgttttagtttgttttaat |
290 |
Q |
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| T |
16660366 |
acacacatgcacacgtatccatttaaatataagatcattgtttgttattatagaaaaaattgttttaatcgggagtaaatttgttttagtttgttttaat |
16660267 |
T |
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| Q |
291 |
tggcagtttttaaagagagaaataatagattgattttgaaaatatttttgagagtcaaattcatatataacgattgactttgtattagattaactaatat |
390 |
Q |
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| T |
16660266 |
tggcagtttttaaagagagaaataatagattgattttgacaatatttttgagagtcaaattcatatttaacaattgactttgtattagattaactaatat |
16660167 |
T |
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| Q |
391 |
tgtctttttcaatgacaatttattcattgttaaatgctnnnnnnnttctctctaaagagaccgacagtgtcaaaataaatctttcaaataagtagatata |
490 |
Q |
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| T |
16660166 |
tgtctttttcaatgacaatttattcattgttaaatgcaaacaaaattctctctaaagagacggacagtatcaaaataaatctttcaaataagtagatata |
16660067 |
T |
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| Q |
491 |
aacttatt |
498 |
Q |
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| T |
16660066 |
aacttatt |
16660059 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 16525779 - 16525828
Alignment:
| Q |
268 |
aatttgttttagtttgttttaattggcagtttttaaagagagaaataata |
317 |
Q |
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| T |
16525779 |
aatttgttttagtttgttttaatttgcattttttaaagagagaaataata |
16525828 |
T |
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