View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_30 (Length: 275)

Name: NF1505_low_30

Description: NF1505

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1505_low_30

[»] chr2 (3 HSPs)

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 59; E-Value: 5e-25

Query Start/End: Original strand, 193 - 275

Target Start/End: Original strand, 15471135 - 15471216

Alignment:

Q	193	gtaatgtaccgtgtaattttatagttatttaagctgcgactgggttgtatgtatgccaatgcaaaaattatgttcaagcaaaa	275	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15471135	gtaatgtaccgtgtaattc-atagttatttaagctgtaactgggttgtatatatgccaatgcaaaaattatgttcaagcaaaa	15471216	T

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Target: chr2; HSP #2

Raw Score: 56; E-Value: 3e-23

Query Start/End: Original strand, 61 - 196

Target Start/End: Original strand, 15470944 - 15471086

Alignment:

Q	61	ggctgcattatatacaggcaatgtaccatgtaattcatagtaaggtaagctg-----tgactgggttgtat--gccaatacaaatattaggctcaagcaa	153	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|
T	15470944	ggctgcattatatacaggcaatgtaccatgtatttcatggtgatttaagctgtgacttgactgggttgtataagccaatacaaatattaggttcaagaaa	15471043	T

Q	154	aattgctagacagtaatgtatgttatctctatctttcaagtaa	196	Q
		\|\| \|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|
T	15471044	aagtgctggataataatgtatgttttctatgtctttcaagtaa	15471086	T

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Target: chr2; HSP #3

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 74 - 163

Target Start/End: Original strand, 15471131 - 15471224

Alignment:

Q	74	acaggcaatgtaccatgtaattcatagtaaggtaagctgtgactgggttg----tatgccaatacaaatattaggctcaagcaaaattgctaga	163	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	15471131	acaggtaatgtaccgtgtaattcatagttatttaagctgtaactgggttgtatatatgccaatgcaaaaattatgttcaagcaaaactgctaga	15471224	T

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