View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_35 (Length: 251)

Name: NF1505_low_35
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_low_35
NF1505_low_35
[»] chr2 (4 HSPs)
chr2 (1-234)||(18542361-18542595)
chr2 (79-223)||(18555430-18555575)
chr2 (67-223)||(18550452-18550609)
chr2 (1-87)||(18555865-18555951)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18542595 - 18542361
Alignment:
Q  1 aatggtaaaagaaactaatttaaataatgatgttcatcatattatagattagacaaggaataaaagagagtttatggttttattttacatacttaatgga 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18542595 aatggtaaaagaaactaatttagataatgatgttcatcatattatagactagacaaggaataaaagagagtttatggttttattttacatacttaataga 18542496  T
Q  101 aaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctacttatgtcaccactgtaaccttcccaatttttcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18542495 aaggaatagacacattcattcatctggatttcatgaaggcccttgatttcgttcacttttgctacttatgtcaccactgtaaccttcccaatttttcaaa 18542396  T
Q  201 tat-cccaacctattttattatttgatctcctcct 234  Q
    ||| |||||||||||||||||||||||||||||||    
T  18542395 tatccccaacctattttattatttgatctcctcct 18542361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 18555575 - 18555430
Alignment:
Q  79 tttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctacttatgtcaccact 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18555575 tttattttacatacttaatggaaaggaatagacacgttcattcatctggatttcatgaaggcccttgattcccttcacttttgctacttatgtcaccact 18555476  T
Q  179 gtaaccttcccaatttttcaaatat-cccaacctattttattattt 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  18555475 gtaaccttcccaatttttcaaatatccccaacctattttattattt 18555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 18550609 - 18550452
Alignment:
Q  67 agagtttatggttttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctact 166  Q
    |||||||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  18550609 agagtttatggttttattttacatgctttatgggaatgaatagacacattcattcatctggatttcatggaggctcttgattcccttcacttttgctact 18550510  T
Q  167 tatgtcaccactgtaaccttcccaatttttcaaatat-cccaacctattttattattt 223  Q
    |||||||| | |||||||| || |||||||||||||| ||||||| || |||||||||    
T  18550509 tatgtcacaattgtaacctccctaatttttcaaatatccccaaccaatattattattt 18550452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18555951 - 18555865
Alignment:
Q  1 aatggtaaaagaaactaatttaaataatgatgttcatcatattatagattagacaaggaataaaagagagtttatggttttatttta 87  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  18555951 aatggtgaaagaaactaatttagataaagatgttcatcatattatagactagacaaggaataaaaaagagtttatggttttatttta 18555865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University