View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_36 (Length: 250)
Name: NF1505_low_36
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30223339 - 30223103
Alignment:
| Q |
1 |
aaagaagaaagcgaaatgaagctactgaagtgagagatgttgtggttaggttaatgtgaaacgaaaacgacgagaaatgaaagtgaaaaaagagtgttga |
100 |
Q |
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| T |
30223339 |
aaagaagaaagcgaaatgaagctactgaagtgagagatgttgtggttaggttaatgtgaaacgaaaacgctaagaaatgaaagtgaaaaaagagtgtcga |
30223240 |
T |
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| Q |
101 |
agatgaaaggtttacctacctgggttttcatctggctgaagtgcttagtgccattttgttgtttctgggagtgcgagactgagagtgagaggaacgagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30223239 |
agatgaaaggtttacctacctgggttttcatctgactgaagtgcttagtgccattttgttgtttctgggagtgcgagactgagagtgagaggaacgagga |
30223140 |
T |
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| Q |
201 |
gctttgagaaaaataaatagggctccacactttgcct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30223139 |
gctttgagaaaaataaatagggctccacactttgcct |
30223103 |
T |
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