View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_38 (Length: 250)

Name: NF1505_low_38
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_low_38
NF1505_low_38
[»] chr1 (15 HSPs)
chr1 (1-237)||(2011786-2012016)
chr1 (1-237)||(2010376-2010606)
chr1 (1-237)||(2019595-2019819)
chr1 (1-237)||(2006278-2006523)
chr1 (1-190)||(6601779-6601962)
chr1 (3-68)||(6592643-6592708)
chr1 (144-181)||(2948497-2948534)
chr1 (144-181)||(3340472-3340509)
chr1 (144-185)||(4323139-4323180)
chr1 (118-179)||(9818941-9819002)
chr1 (1-65)||(3372514-3372578)
chr1 (134-181)||(3349336-3349383)
chr1 (113-172)||(3378667-3378726)
chr1 (144-182)||(3361682-3361720)
chr1 (113-191)||(6592526-6592604)
[»] chr2 (8 HSPs)
chr2 (141-195)||(20923438-20923492)
chr2 (1-77)||(20934284-20934360)
chr2 (1-68)||(20952828-20952895)
chr2 (1-68)||(39273873-39273940)
chr2 (144-194)||(20952962-20953012)
chr2 (2-85)||(20926900-20926984)
chr2 (2-85)||(20923302-20923385)
chr2 (144-198)||(20927040-20927094)
[»] chr5 (1 HSPs)
chr5 (144-181)||(17969825-17969862)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2011786 - 2012016
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctga 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||    
T  2011786 tgagaacaagtattttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatc------tga 2011879  T
Q  101 ccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgtt 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || || |    
T  2011880 acaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattatgggccaatcaacaagttcaagctctctccttttggt 2011979  T
Q  201 gtgatcagtgcgactgctcttgataggtggatttttc 237  Q
     | || |||||||||||||||||||||||||||||||    
T  2011980 ctcattagtgcgactgctcttgataggtggatttttc 2012016  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2010376 - 2010606
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctga 100  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||||   |         
T  2010376 tgagaacaagtgttttatgcaacaaatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacatcccat----- 2010470  T
Q  101 ccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgtt 200  Q
     | ||||  || |||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  2010471 -cgccctttagttatcgagagaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctctgattgtggt 2010569  T
Q  201 gtgatcagtgcgactgctcttgataggtggatttttc 237  Q
    |||||||||| ||||||| ||||||||| ||||||||    
T  2010570 gtgatcagtgtgactgcttttgataggtagatttttc 2010606  T

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Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2019595 - 2019819
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctga 100  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||| ||||||||||| ||| ||  |||| |||| ||||||||| |             
T  2019595 tgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgtctctgcaacagc--------- 2019685  T
Q  101 ccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgtt 200  Q
       ||||   | ||||    ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  2019686 ---cccttttgttatcggaggaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctctgattgtggt 2019782  T
Q  201 gtgatcagtgcgactgctcttgataggtggatttttc 237  Q
    |||||||||| |||||||||||| |||||||||||||    
T  2019783 gtgatcagtgtgactgctcttgacaggtggatttttc 2019819  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2006278 - 2006523
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcga---tttc 97  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||| ||||||||||| |    |||    
T  2006278 tgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacatccaaatgttc 2006377  T
Q  98 tgaccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgt 197  Q
     || |    |  || |||  || |||||||| ||| |||||| || || |||||||||||||||||||||||||||||||||||| || |||||  ||||    
T  2006378 cgaactttttttagatatggagggaaagcttatggaaattattgatcaggtacttttactttattctgggccaatcaacaagttccagatctctcgttgt 2006477  T
Q  198 gttg------tgatcagtgcgactgctcttgataggtggatttttc 237  Q
    | ||      | || |||| ||||||||||||||||||||||||||    
T  2006478 ggtgtcaatctcattagtgagactgctcttgataggtggatttttc 2006523  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 6601962 - 6601779
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctga 100  Q
    ||||||||||| ||||||||| |||||||||||||||||||  |||| | ||||||||||||||||||   |||||| | || |  ||      ||||||    
T  6601962 tgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacac------ttctga 6601869  T
Q  101 ccaccctgcagctatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctc 190  Q
      ||| |  || ||||||||| || |||| |  |||||| || ||||||||||||||  |||||||||||||||| ||||||||||||||    
T  6601868 agaccttttagttatcaagagcaaactttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctc 6601779  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 6592708 - 6592643
Alignment:
Q  3 agaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 68  Q
    ||||||||| ||||||| | ||| |||||||||||||||| |||| | ||||||||||||||||||    
T  6592708 agaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgat 6592643  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 2948534 - 2948497
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagtt 181  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2948534 catgtacttttacttcattctgggccaatcaacaagtt 2948497  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 3340472 - 3340509
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagtt 181  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3340472 catgtacttttacttcattctgggccaatcaacaagtt 3340509  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 4323180 - 4323139
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagttcaag 185  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  4323180 catgtacttttacttcattctgggccaatcaacatgttcaag 4323139  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 9819002 - 9818941
Alignment:
Q  118 agagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaag 179  Q
    |||||||| |||||  |||||| || ||||||||||||||| |||| |||||||||||||||    
T  9819002 agagaaagtttttgagaattattgatcatgtacttttacttcattccgggccaatcaacaag 9818941  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3372514 - 3372578
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgttt 65  Q
    ||||||||||||||||||| | ||  |||||| ||||||||  |||| |||||||||||||||||    
T  3372514 tgagaacaagtgttttatccagcagctggaggaacaaatggtacacactaccaaatcttgtgttt 3372578  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 3349336 - 3349383
Alignment:
Q  134 aattatcgaccatgtacttttactttattctgggccaatcaacaagtt 181  Q
    |||||| || ||||||||||||||| ||||||||| ||||||||||||    
T  3349336 aattattgatcatgtacttttacttcattctgggctaatcaacaagtt 3349383  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 3378667 - 3378726
Alignment:
Q  113 tatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaat 172  Q
    |||| |||| ||| |||||  ||||||||| ||||||||||||||| |||||||||||||    
T  3378667 tatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 3378726  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 3361682 - 3361720
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagttc 182  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  3361682 catgtacttttacttcattatgggccaatcaacaagttc 3361720  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 6592604 - 6592526
Alignment:
Q  113 tatcaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctct 191  Q
    ||||||||| |||||||    |||||| || ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  6592604 tatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 6592526  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 20923438 - 20923492
Alignment:
Q  141 gaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgatt 195  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  20923438 gaccatgtacttttacttcattctgggccaatcaacaagttcaagatctctgatt 20923492  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 20934284 - 20934360
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgt 77  Q
    ||||||||||||||||||| || ||||||||| ||||||||  |||| | ||||||||||||||||||  |||||||    
T  20934284 tgagaacaagtgttttatctaaaaaatggaggaacaaatggtacacactcccaaatcttgtgtttgatagacaatgt 20934360  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 20952828 - 20952895
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 68  Q
    ||||||||||||||||||| |  ||||||||| ||||||||| |||| | ||||||||||||||||||    
T  20952828 tgagaacaagtgttttatctagaaaatggaggaacaaatggaacacacttccaaatcttgtgtttgat 20952895  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39273873 - 39273940
Alignment:
Q  1 tgagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 68  Q
    |||||||||||||||| || | | |||||||||||||||||  |||| ||||||||||||||||||||    
T  39273873 tgagaacaagtgttttgtccagccaatggaggtacaaatggtacacactaccaaatcttgtgtttgat 39273940  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 20952962 - 20953012
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagttcaagctctctgat 194  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  20952962 catgtacttttacttcattctgggccaatcaacatgttcaagttctatgat 20953012  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 20926900 - 20926984
Alignment:
Q  2 gagaacaagtgttttatc-aaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 85  Q
    |||||||||||||||||| ||| ||||||||| ||||| ||  |||| ||||||||||||| ||||||   |||||||| |||||    
T  20926900 gagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtctctgc 20926984  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 20923302 - 20923385
Alignment:
Q  2 gagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 85  Q
    |||||||||||||||||| |||||||||||| | ||||||  ||||  |||  |||||||||| |||  ||||||||| |||||    
T  20923302 gagaacaagtgttttatctaacaaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgc 20923385  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 20927040 - 20927094
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtg 198  Q
    ||||| ||||||||| ||| |||||||||||||| ||||||| ||||||| ||||    
T  20927040 catgtccttttacttcattatgggccaatcaacatgttcaagttctctgagtgtg 20927094  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 17969825 - 17969862
Alignment:
Q  144 catgtacttttactttattctgggccaatcaacaagtt 181  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  17969825 catgtacttttacttcattcagggccaatcaacaagtt 17969862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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