View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_45 (Length: 236)
Name: NF1505_low_45
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 2017413 - 2017236
Alignment:
| Q |
45 |
ttgagggacaaatttgtgaccatgtgcaaatgtcagagactattttgggttttatttttcatgaaaaaattggttcgcatgaaaattatgaagggtcaaa |
144 |
Q |
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| T |
2017413 |
ttgagggacaaatttgtgaccatgtgcaaatgtcagagactattttgggttttatttctcatgacaaaattggttcgcaggaaaattatgaagggtcaaa |
2017314 |
T |
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| Q |
145 |
tcaggccttccctcttttattgaaaaagatgtgtta-aaaatcaaaattttgagtttcttctcctaaagagagaaaac |
221 |
Q |
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| T |
2017313 |
tcaggccttccctcttttattgaaaaagatgtgttaaaaaatcaaaattttgtgtttcttctcctaaagagagaaaac |
2017236 |
T |
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