View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_5 (Length: 489)

Name: NF1505_low_5
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_low_5
NF1505_low_5
[»] chr7 (1 HSPs)
chr7 (252-411)||(47363495-47363658)
[»] chr1 (2 HSPs)
chr1 (209-290)||(4816742-4816823)
chr1 (299-376)||(34711561-34711638)
[»] chr3 (5 HSPs)
chr3 (297-481)||(33508409-33508590)
chr3 (209-290)||(25500985-25501066)
chr3 (368-405)||(1930009-1930046)
chr3 (339-411)||(8690337-8690409)
chr3 (339-411)||(9042206-9042278)
[»] chr5 (2 HSPs)
chr5 (209-262)||(41732461-41732514)
chr5 (221-290)||(43391063-43391132)
[»] chr8 (1 HSPs)
chr8 (207-290)||(22642806-22642889)
[»] chr6 (1 HSPs)
chr6 (368-405)||(1069058-1069095)
[»] chr2 (1 HSPs)
chr2 (368-405)||(29370290-29370327)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 252 - 411
Target Start/End: Complemental strand, 47363658 - 47363495
Alignment:
Q  252 aattttgacactcttgctaggtta----tgggcgacacaatttctttataagtttggaaaatgacacaaaaatgatctacaacgagacataatattacca 347  Q
    ||||||||||||||||||||| ||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  47363658 aattttgacactcttgctaggctagctatgggcgacacaatttctttataagtttgaaaaatgacacaaaaatgatctacaacgagacataatattatca 47363559  T
Q  348 aattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 411  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  47363558 aattccaactgattattcggcctatcaactatgctatcagccactagcttagaatctagctcaa 47363495  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 4816823 - 4816742
Alignment:
Q  209 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 290  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||| | ||||||||||| |||||    
T  4816823 aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataattt 4816742  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 34711561 - 34711638
Alignment:
Q  299 gtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaac 376  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  34711561 gtttggaacatgacacaatagtgatctacatcgagacataatattactaaattccgactgattattggacctatcaac 34711638  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 481
Target Start/End: Complemental strand, 33508590 - 33508409
Alignment:
Q  297 aagtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaactatgctatcagccactagct 396  Q
    |||||| ||||||||||||| | ||||||||| | | ||||||||||| ||||||   || ||||||||| |||||||| |||| || |  | |||| ||    
T  33508590 aagtttagaaaatgacacaatagtgatctacaccaa-acataatattatcaaattttgaccgattattggacctatcaaatatgatacccactactaact 33508492  T
Q  397 tacaatctaactcaatttagcaccttcgataatctcaattgatcaaaaccatgagatggcatcagacaaccccattgcctatgct 481  Q
    ||||||| | |||||||| ||||||| |||| |  ||||||||| || |||| ||||||| |||  ||| |||||||||||||||    
T  33508491 tacaatcaagctcaattt-gcacctttgatagttccaattgatc-aagccataagatggcgtcacgcaagcccattgcctatgct 33508409  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 25501066 - 25500985
Alignment:
Q  209 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 290  Q
    ||||||||||| |||||||| ||||||| | ||| ||||||||||||||||  | |||||||   |||||||||||||||||    
T  25501066 aatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaattt 25500985  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 1930046 - 1930009
Alignment:
Q  368 cctatcaactatgctatcagccactagcttacaatcta 405  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1930046 cctatcaactatgctatcaaccactagcttacaatcta 1930009  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 8690409 - 8690337
Alignment:
Q  339 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 411  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  8690409 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 8690337  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 9042278 - 9042206
Alignment:
Q  339 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 411  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  9042278 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 9042206  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 41732514 - 41732461
Alignment:
Q  209 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacac 262  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||| |||||||    
T  41732514 aatacaagatgaaatcaaatcaaaaacttgatgacgagcatgcaatcttgacac 41732461  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 43391063 - 43391132
Alignment:
Q  221 aatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 290  Q
    |||||||||||| || ||||||  |||||||| ||||||||| |||||||   ||||||||||| |||||    
T  43391063 aatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataattt 43391132  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 22642806 - 22642889
Alignment:
Q  207 taaatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 290  Q
    |||||||||||||||||||||||||| ||||| |||  ||||||||| || ||| | || |||| |  |||||||||| |||||    
T  22642806 taaatacaagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaagcgatgggcgacataattt 22642889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 1069058 - 1069095
Alignment:
Q  368 cctatcaactatgctatcagccactagcttacaatcta 405  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1069058 cctatgaactatgctatcatccactagcttacaatcta 1069095  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 29370327 - 29370290
Alignment:
Q  368 cctatcaactatgctatcagccactagcttacaatcta 405  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  29370327 cctatcaattatgctatcaaccactagcttacaatcta 29370290  T

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