View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_51 (Length: 224)

Name: NF1505_low_51
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1505_low_51
NF1505_low_51
[»] chr3 (8 HSPs)
chr3 (18-148)||(4582374-4582504)
chr3 (147-224)||(4582594-4582671)
chr3 (148-224)||(4614258-4614335)
chr3 (18-126)||(46478420-46478528)
chr3 (162-224)||(46469631-46469693)
chr3 (169-222)||(51942045-51942098)
chr3 (22-80)||(47398194-47398252)
chr3 (151-203)||(46478252-46478304)
[»] chr8 (2 HSPs)
chr8 (172-220)||(9693498-9693546)
chr8 (178-224)||(9677763-9677809)
[»] chr4 (3 HSPs)
chr4 (19-133)||(15555193-15555307)
chr4 (162-224)||(35154069-35154131)
chr4 (162-204)||(35160480-35160522)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4582374 - 4582504
Alignment:
Q  18 gttggaaggaaggttgcagagaacggctttgatcaacccacactccattaatgaaagagaggcaaggaccaccggatggagcagcgttggagaggatggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  4582374 gttggaaggaaggttgcagagaacggctttgatcaacccacactccattaaggaaagagaggcaaggaccaccggagggagcagcattggagatgatggc 4582473  T
Q  118 agaaacgagacgagaggcaaaggagttgaga 148  Q
    |||||||||| |||| |||||||||||||||    
T  4582474 agaaacgagatgagaagcaaaggagttgaga 4582504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 4582594 - 4582671
Alignment:
Q  147 gagcgaaagtgggggaaacacaatgttcttatctgattcttttgagaagagatgtttggcgattctgagggaaacttt 224  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  4582594 gagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttt 4582671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 4614258 - 4614335
Alignment:
Q  148 agcgaaagtgggggaaa-cacaatgttcttatctgattcttttgagaagagatgtttggcgattctgagggaaacttt 224  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4614258 agcgaaagtggggaaaaacacaatgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaacttt 4614335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 46478528 - 46478420
Alignment:
Q  18 gttggaaggaaggttgcagagaacggctttgatcaacccacactccattaatgaaagagaggcaaggaccaccggatggagcagcgttggagaggatggc 117  Q
    |||||||||||||||| |||||| || ||||||||||||| || || |  | ||||||||||  |||||||||||  |||| ||||| |||||||||| |    
T  46478528 gttggaaggaaggttgaagagaaagggtttgatcaacccaaacaccgtcgacgaaagagaggagaggaccaccggcgggagaagcgtcggagaggatgac 46478429  T
Q  118 agaaacgag 126  Q
     ||||||||    
T  46478428 ggaaacgag 46478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 46469693 - 46469631
Alignment:
Q  162 aaacacaatgttcttatctgattcttttgagaagagatgtttggcgattctgagggaaacttt 224  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| ||  | |||||||||||    
T  46469693 aaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgttaagggaaacttt 46469631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 51942098 - 51942045
Alignment:
Q  169 atgttcttatctgattcttttgagaagagatgtttggcgattctgagggaaact 222  Q
    ||||| || ||||||| ||||||||| | |||||||||||||||||||||||||    
T  51942098 atgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 51942045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 47398194 - 47398252
Alignment:
Q  22 gaaggaaggttgcagagaacggctttgatcaacccacactccattaatgaaagagaggc 80  Q
    |||||||||||| |||||| || |||| ||||||||||| ||||| | |||||||||||    
T  47398194 gaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaagagaggc 47398252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 46478304 - 46478252
Alignment:
Q  151 gaaagtgggggaaacacaatgttcttatctgattcttttgagaagagatgttt 203  Q
    |||||||| | |||||| ||||| || ||||||||||| ||||||||||||||    
T  46478304 gaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt 46478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 9693498 - 9693546
Alignment:
Q  172 ttcttatctgattcttttgagaagagatgtttggcgattctgagggaaa 220  Q
    ||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  9693498 ttcttgtctgattcttttgagaagagatgtttggcgatggtgagggaaa 9693546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 9677763 - 9677809
Alignment:
Q  178 tctgattcttttgagaagagatgtttggcgattctgagggaaacttt 224  Q
    |||||||||||||||||||||||||||||||   |||||||||||||    
T  9677763 tctgattcttttgagaagagatgtttggcgaccgtgagggaaacttt 9677809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 15555307 - 15555193
Alignment:
Q  19 ttggaaggaaggttgcagagaacggctttgatcaacccacactccattaatgaaagagaggcaaggaccaccggatggagcagcgttggagaggatggca 118  Q
    ||||||||||| ||| |||||| || |||| ||||||||||| |||||   || |||||||||||| || ||||| ||||||||||    ||||||| |     
T  15555307 ttggaaggaagtttgaagagaaagggtttgctcaacccacacaccattggcgacagagaggcaaggcccgccggagggagcagcgtctttgaggatgacg 15555208  T
Q  119 gaaacgagacgagag 133  Q
    |||||||| ||||||    
T  15555207 gaaacgaggcgagag 15555193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 35154131 - 35154069
Alignment:
Q  162 aaacacaatgttcttatctgattcttttgagaagagatgtttggcgattctgagggaaacttt 224  Q
    |||||| || ||||| |||||||| |||||||| ||||||||||||||  |||||||||||||    
T  35154131 aaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaacttt 35154069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 35160522 - 35160480
Alignment:
Q  162 aaacacaatgttcttatctgattcttttgagaagagatgtttg 204  Q
    |||||| |||||||| ||||||||||| |||||||||||||||    
T  35160522 aaacacgatgttcttttctgattctttggagaagagatgtttg 35160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University