View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_53 (Length: 224)
Name: NF1505_low_53
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_53 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 25639560 - 25639738
Alignment:
| Q |
46 |
caaaatgtggaacatcagaaaaacaaaagcaacaacacaaagatactcaacaatgtgaagtacttagcgttattagtaacaaccaaccacatctaaaatt |
145 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25639560 |
caaaatgtggaacatcagcaaaacaaaagcaacaacacaaagatactcaacaatgtgaagtacttagcgttattagtaacaaccaaccacatctaaaatt |
25639659 |
T |
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| Q |
146 |
cttaatcaaattcggaattgaattttactagatctgaaattctaaattgaaatgtcaaaatcacatcaaattctacaaa |
224 |
Q |
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| T |
25639660 |
cttgatcaaattcggaattgaattttactagatctgaaattctaaattgaaatgtcaaaatcacatcaaattctacaaa |
25639738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 42405232 - 42405358
Alignment:
| Q |
13 |
aaaatccaattcctaacagcagcaactacggtt-caaaatgtggaacatcagaaaaacaaaagcaacaacacaaagatactcaacaatgtgaagtactta |
111 |
Q |
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|||||||| |||| || ||||||| ||||| || ||||||| | |||| | | ||||||||||||||| |||||||||||||||||| ||||||| |||| |
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| T |
42405232 |
aaaatccagttccaaatagcagcagctacgctttcaaaatgcgaaacagcggcaaaacaaaagcaacaccacaaagatactcaacaacgtgaagttctta |
42405331 |
T |
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| Q |
112 |
gcgttattagtaacaaccaaccacatc |
138 |
Q |
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| T |
42405332 |
gcattattagcaacaaccaatcacatc |
42405358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 37399164 - 37399264
Alignment:
| Q |
13 |
aaaatccaattcctaacagcagcaactacggttcaaaatgtggaacatcagaaaaacaaaagcaacaacacaaagatactcaacaatgtgaagtacttag |
112 |
Q |
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|||||||||||| ||||| | |||||||| |||||||| || |||| ||| ||||||| | ||||||||| ||||||||||| ||||||||||||||| |
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| T |
37399164 |
aaaatccaattcaaaacagtaacaactacgcttcaaaatatgaaacaacagcaaaacaatcgtaacaacacagagatactcaaccatgtgaagtacttag |
37399263 |
T |
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| Q |
113 |
c |
113 |
Q |
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| T |
37399264 |
c |
37399264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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