View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1505_low_57 (Length: 212)

Name: NF1505_low_57

Description: NF1505

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1505_low_57

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 198; E-Value: 1e-108

Query Start/End: Original strand, 1 - 198

Target Start/End: Original strand, 15406826 - 15407023

Alignment:

Q	1	aaaccgaactactgttgcatactacaatttagaactatgcaaaggaagatatataccttgattagtgatgagcctataagcatgaccaagattaagagtt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15406826	aaaccgaactactgttgcatactacaatttagaactatgcaaaggaagatatataccttgattagtgatgagcctataagcatgaccaagattaagagtt	15406925	T

Q	101	tcattaggcctaagcaacttaacacgagtaaacctaactgtcttttgttcttgattctgttcttgaggttgaggaggtaatggcataatcaatgaaac	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15406926	tcattaggcctaagcaacttaacacgagtaaacctaactgtcttttgttcttgattctgttcttgaggttgaggaggtaatggcataatcaatgaaac	15407023	T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 54 - 129

Target Start/End: Original strand, 26460964 - 26461039

Alignment:

Q	54	taccttgattagtgatgagcctataagcatgaccaagattaagagtttcattaggcctaagcaacttaacacgagt	129	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \| \| \|\|\|\|\| \|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26460964	taccttgagttgtgatgagcctataagcatgtcctaaagtgagagtgtcatcaggcttaagcaacttaacacgagt	26461039	T

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