View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1505_low_58 (Length: 212)
Name: NF1505_low_58
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_58 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30223746 - 30223534
Alignment:
| Q |
1 |
aagcatccaaagtcatgagtgagtcaaaggtgttataaacttctgtattaccctaatctttctattcttgaatttccatgagaaaatacacaacagtaca |
100 |
Q |
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| T |
30223746 |
aagcatccaaagtcatgagtgagtcaaaggtgttataaacttctgtattaccctaatctttctattcttgaatttccatgagaatatacacaacagtaca |
30223647 |
T |
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| Q |
101 |
taaatgtgttaagctttaaaaaagggattatttgaaaaatcac-nnnnnnnnncagtcatttctgtttgtacatgtgataaatatcatacagagaacatg |
199 |
Q |
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| T |
30223646 |
taaatgggttaagctttaaaaaagggattatttgaaaaatcacttttttttttcagtcatttctgtttgtacatgtgataaatgtcatacagagaacatg |
30223547 |
T |
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| Q |
200 |
caatggaagaatc |
212 |
Q |
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||||||||||||| |
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| T |
30223546 |
caatggaagaatc |
30223534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 42994166 - 42994026
Alignment:
| Q |
4 |
catccaaagtcatgagtgagtcaaaggtgttataaacttctgtattaccctaatctttctattcttgaatttccatgagaaaatacacaacagtacataa |
103 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
42994166 |
catccaaagtcatgagtgagtcaaaggggttataaacttctgcattaccctaatctttctattcttgaaattccatgagaaaataaacaacagcacataa |
42994067 |
T |
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| Q |
104 |
atgtgttaagctttaa-aaaagggattatttgaaaaatcac |
143 |
Q |
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| T |
42994066 |
atgggttaagctttaaaaaaagggataatttgtaaaatcac |
42994026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 82397 - 82515
Alignment:
| Q |
5 |
atccaaagtcatgagtgagtcaaaggtgttataaacttctgtattaccctaatctttctattcttgaatttccatgagaaaatacacaacagtacataaa |
104 |
Q |
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||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||| |
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| T |
82397 |
atccaaagtcatgggtgagtcaaaggggttataaacttttgcattaccctaatctttcgattcttgaaattccatgagaaaataaacaacaacacataaa |
82496 |
T |
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| Q |
105 |
tgtgttaagctttaaaaaa |
123 |
Q |
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| T |
82497 |
tgggttaagctttaaaaaa |
82515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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