View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1505_low_61 (Length: 204)
Name: NF1505_low_61
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 44968539 - 44968381
Alignment:
| Q |
30 |
aatataccgccgaatcaagttggccctagcaatcaacctcctgacccaggttgcatttaagagccttgtcacgttgatagttttctgagagtatctagct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44968539 |
aatataccgccgaatcaagttggccctagcaatcaacctcctgacccaggttgcatttaagagccttgtcacgttgatagttttctgagagtatctagct |
44968440 |
T |
|
| Q |
130 |
ctcagttgtttcatatctttccacatcagctattgggactatactctgacattttgctt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44968439 |
ctcagttgtttcatatctttccacatcagctattgggactatacgctgacattttgctt |
44968381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 44982854 - 44982695
Alignment:
| Q |
30 |
aatataccgccgaatcaagttggccctagcaatcaacctcctgacccaggtt-gcatttaagagccttgtcacgttgatagttttctgagagtatctagc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| || || ||||||| | ||| |||||||||| || |
|
|
| T |
44982854 |
aatataccgccgaatcaagttggccctagcaatcaacctccttatccaggtttgcatttaagagccctggcatgttgatactattccgagagtatctggc |
44982755 |
T |
|
| Q |
129 |
tctcagttgtttcatatctttccacatcagctattgggactatactctgacattttgctt |
188 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
44982754 |
tctcagttgtttcatgtctttcagcatcagctattgagactatacgctgacattttgctt |
44982695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 40911448 - 40911607
Alignment:
| Q |
30 |
aatataccgccgaatcaagttggccctagcaatcaacctcctgacccaggtt-gcatttaagagccttgtcacgttgatagttttctgagagtatctagc |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| || || ||||||| | ||| |||||||||| || |
|
|
| T |
40911448 |
aatatacccccgaatcaagttggccctagcaatcaacctccttatccaggtttgcatttaagagccctggcatgttgatactattccgagagtatctggc |
40911547 |
T |
|
| Q |
129 |
tctcagttgtttcatatctttccacatcagctattgggactatactctgacattttgctt |
188 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
40911548 |
tctcagttgtttcatgtctttcagcatcagctattgagactatacgctgacattttgctt |
40911607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 44974547 - 44974407
Alignment:
| Q |
42 |
aatcaagttggccctagcaatcaacctcctgacccaggtt-gcatttaagagccttgtcacgttgatagttttctgagagtatctagctctcagttgttt |
140 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| ||| ||| ||||||||||| ||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
44974547 |
aatcaagttggccctagcaatgaacctcctaacccaggttagcacttaggagccttgtcatagtgatagtattccgagagtatctgatactcagttgttt |
44974448 |
T |
|
| Q |
141 |
catatctttccacatcagctattgggactatactctgacat |
181 |
Q |
| |
|
||| |||||| |||| ||||||||| |||||||| |||||| |
|
|
| T |
44974447 |
catgtctttcaacattagctattggaactatactgtgacat |
44974407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 44997249 - 44997180
Alignment:
| Q |
105 |
gatagttttctgagagtatctagctctcagttgtttcatatctttccacatcagctattgggactatact |
174 |
Q |
| |
|
|||||| ||| ||||| |||| |||||||||||||||| |||||| | || ||||||| |||||||||| |
|
|
| T |
44997249 |
gatagtattccgagagcatctgactctcagttgtttcatgtctttcaatattagctattaggactatact |
44997180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University