View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1505_low_8 (Length: 440)
Name: NF1505_low_8
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_8 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 28430782 - 28430380
Alignment:
| Q |
20 |
ctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430782 |
ctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttat |
28430683 |
T |
|
| Q |
120 |
caagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430682 |
caagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaa |
28430583 |
T |
|
| Q |
220 |
gctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28430582 |
gctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattt |
28430483 |
T |
|
| Q |
320 |
tcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaatttttgtaccttgtctccca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28430482 |
tcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaatttttgtaccttgtctccca |
28430383 |
T |
|
| Q |
420 |
cct |
422 |
Q |
| |
|
||| |
|
|
| T |
28430382 |
cct |
28430380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 23 - 399
Target Start/End: Original strand, 13373093 - 13373469
Alignment:
| Q |
23 |
atcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaa |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| | || || ||| || | || |
|
|
| T |
13373093 |
atcactgttacattagcaccaaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaa |
13373192 |
T |
|
| Q |
123 |
gtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagct |
222 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| || || || |||||||| || |||||||| |||| | || ||||| | |||||| ||| |
|
|
| T |
13373193 |
gtccaaaatatttcaaagggctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaagtg |
13373292 |
T |
|
| Q |
223 |
ttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcg |
322 |
Q |
| |
|
||||| || ||||| || || |||||||||||||||||||| || ||||||| |||||||| || |||||||| |||| |||| || ||||| ||| |
|
|
| T |
13373293 |
ttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcg |
13373392 |
T |
|
| Q |
323 |
agactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaa |
399 |
Q |
| |
|
||| || ||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13373393 |
agatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaa |
13373469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 13378895 - 13379264
Alignment:
| Q |
29 |
gttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaa |
128 |
Q |
| |
|
||||||||| ||||||| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||| |||| |||||| |||| ||||| |
|
|
| T |
13378895 |
gttaccttaacaccaaaggctttggcgaacttcacagccatatgacctaatccaccaagaccaaccacacctatatgcagtccaggtttgtcaaatccaa |
13378994 |
T |
|
| Q |
129 |
aatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtc |
228 |
Q |
| |
|
||| ||||| ||||||||||| |||||||| || || ||||||||||| ||||||||||| | || | || ||||| | || | |||| |||||| |
|
|
| T |
13378995 |
aatgtttcattgggctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtc |
13379094 |
T |
|
| Q |
229 |
ggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactt |
328 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| |||| || |||||||||||| |
|
|
| T |
13379095 |
gacaaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcaataattttcgagatcc |
13379194 |
T |
|
| Q |
329 |
tcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttga |
398 |
Q |
| |
|
||| ||| |||| ||||| ||||||||| |||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
13379195 |
tcgccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccctatctccaactttga |
13379264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 13419363 - 13419602
Alignment:
| Q |
35 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatt |
134 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| | || ||| || || ||| |||||| | |
|
|
| T |
13419363 |
ttagcaccgaaagcttttgcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatattcataccaggcttgtcgagttcaaaatgtc |
13419462 |
T |
|
| Q |
135 |
tcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgac |
234 |
Q |
| |
|
| ||| |||||||| ||||| || ||||| || |||||| | |||||||||||||||| ||||| ||||||| ||||||||| ||||| | || |
|
|
| T |
13419463 |
gaagaggactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaac |
13419562 |
T |
|
| Q |
235 |
cattgtgtcggagtagcctccatatgtgatggtgccatca |
274 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
13419563 |
cattgagtcggagtaacctccatatgtgacggtgccatca |
13419602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 13446914 - 13447153
Alignment:
| Q |
35 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatt |
134 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| | || ||| || || |||||||||| | |
|
|
| T |
13446914 |
ttagcaccaaaagctttagcaaatttcacagccatatgaccaagtccaccaagaccaacaactcctatattcataccaggcttgtcgagtccaaaatgtc |
13447013 |
T |
|
| Q |
135 |
tcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgac |
234 |
Q |
| |
|
| ||| |||||||| |||| || ||||| || |||||| | ||| |||||||||||| ||||| ||||||| ||||||||| ||||| | || |
|
|
| T |
13447014 |
gaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaac |
13447113 |
T |
|
| Q |
235 |
cattgtgtcggagtagcctccatatgtgatggtgccatca |
274 |
Q |
| |
|
||||| ||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
13447114 |
cattgagtcggagaaacctccataggtgatagtgccatca |
13447153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 13426238 - 13426312
Alignment:
| Q |
19 |
actaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaac |
93 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426238 |
actaattactgttacattagcaccaaaagctttggcgaatttcacagccatatgaccaagtccaccaagaccaac |
13426312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 13389400 - 13389225
Alignment:
| Q |
19 |
actaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggttta |
118 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| | | ||||||| |
|
|
| T |
13389400 |
actaatcactgttacaatcgcaccaaatgctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacctatacgaagaccaggttta |
13389301 |
T |
|
| Q |
119 |
tcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggta |
194 |
Q |
| |
|
|| |||||| ||||| | | ||| || ||||| |||||||| || || |||||||| || ||||| ||||| |||| |
|
|
| T |
13389300 |
tcgagtccataatatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggta |
13389225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 13413018 - 13413084
Alignment:
| Q |
35 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacaccta |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
13413018 |
ttagcaccgaaagctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacaccta |
13413084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 13385563 - 13385499
Alignment:
| Q |
35 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
13385563 |
ttagcaccaaaagctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacc |
13385499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 404
Target Start/End: Original strand, 13453867 - 13454236
Alignment:
| Q |
35 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatt |
134 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||| | || | ||| || || |||||||||| | |
|
|
| T |
13453867 |
ttagcaccgaaagctttggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctatattcatatcaggcttgtcgagtccaaaatgtc |
13453966 |
T |
|
| Q |
135 |
tcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgac |
234 |
Q |
| |
|
| ||| ||||| || || ||||| || || ||||||||||| || ||||||||||||| || |||||||| | ||||||| ||||||| || |
|
|
| T |
13453967 |
gaagaggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaac |
13454066 |
T |
|
| Q |
235 |
cattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttg |
334 |
Q |
| |
|
||||| ||| ||| ||||||||| ||| |||| |||||| | |||||||| | ||||| ||| || ||||||||||| || ||| | || |
|
|
| T |
13454067 |
cattgagtcagagaagcctccatgagtgctggttccatcactgtatttggaaccatcagtgagtgtcaattggggacagtaattctcaagattatcaaca |
13454166 |
T |
|
| Q |
335 |
caattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaattttt |
404 |
Q |
| |
|
|||||||| |||||||| || || | ||||| ||| || |||||||| |||||||||||||||| |||| |
|
|
| T |
13454167 |
caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttt |
13454236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 13393807 - 13393733
Alignment:
| Q |
19 |
actaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaac |
93 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
13393807 |
actaattactgttacattagctccaaaagcttttgcaaacttcacacccaagtgaccaagtccaccaagaccaac |
13393733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 47601185 - 47601327
Alignment:
| Q |
35 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatt |
134 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
47601185 |
ttagccccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttatcgagtccaaaatatc |
47601284 |
T |
|
| Q |
135 |
tcaaagggctatacaccgtgatcccggcgcagaggagaggagc |
177 |
Q |
| |
|
| ||| |||||||| ||||| ||||| || || |||||||| |
|
|
| T |
47601285 |
gaagaggactatacactgtgataccggcacaaagaagaggagc |
47601327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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