View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1505_low_9 (Length: 438)
Name: NF1505_low_9
Description: NF1505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1505_low_9 |
 | |
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| [»] scaffold0496 (1 HSPs) |
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| [»] scaffold1330 (2 HSPs) |
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| [»] scaffold0345 (2 HSPs) |
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| [»] scaffold0105 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Original strand, 44919943 - 44920356
Alignment:
| Q |
10 |
atgaacacgccaaggagaatgtgttcagccgtgtttatggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919943 |
atgaacacgccaaggagaatgtgttcagccgtgtttatggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtg |
44920042 |
T |
|
| Q |
110 |
gtgaagagtttgatctcaagacgcggaaatggcgcaaaatacctaacatgtgtccaccgcgtaacggaggagatggtgcgaatgagacacatgtcagtgg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44920043 |
gtgaagagtttgatctcaagacgcggaaatggcgcaaaatacctaacatgtgtccaccgcgtaacggaggagatggtgcgaatgagacacctgtcagtgg |
44920142 |
T |
|
| Q |
210 |
cgaggcacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
44920143 |
cgaggcacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagaagaaaattcatgg |
44920242 |
T |
|
| Q |
310 |
gtcaccattggaagcctccctgagagagtaacctcggtaaatggatggggaatggcctttagatcatgtggagataagctagttgtcattggaggtccta |
409 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44920243 |
gtcaccattggaagcctccctgagagagtaacctcggtaaatggatggggaatggcctttagatcatgtggagataagctagttgtcattggaggtccta |
44920342 |
T |
|
| Q |
410 |
gtctttatggtgga |
423 |
Q |
| |
|
|||||||||||||| |
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|
| T |
44920343 |
gtctttatggtgga |
44920356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 7411841 - 7411921
Alignment:
| Q |
43 |
tttatggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||| ||| || |||||||| || |||||| |
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|
| T |
7411841 |
tttatggatgaaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgat |
7411921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 7457920 - 7458000
Alignment:
| Q |
43 |
tttatggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||| ||| || |||||||| || |||||| |
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|
| T |
7457920 |
tttatggatgaaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgat |
7458000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 386
Target Start/End: Original strand, 2932 - 3103
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||| ||||| |||||| ||||||||||||| | |||| ||||||| | || | ||||||| |
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| T |
2932 |
cacctcccttgattgcagttgtaaaaaatgtattgtatgctgcagattatggaaaacaagaagtaaagaagtatgataaagacaacaactattgggtcat |
3031 |
T |
|
| Q |
315 |
cattggaagcctccctgagagagtaacctcggtaaatggatggggaatggcctttagatcatgtggagataa |
386 |
Q |
| |
|
|||||||||| | |||||| || || ||||| ||||| |||||| | || ||| |||||||||||||||| |
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| T |
3032 |
cattggaagctttcctgagcaagctacatcggtgaatggttggggactagcatttcgatcatgtggagataa |
3103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 1734 - 1843
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||| | |||| ||||||| | || || ||||||| |
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|
| T |
1734 |
cacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaaaagtaaagaagtatgataaagacaacaactcttgggtcat |
1833 |
T |
|
| Q |
315 |
cattggaagc |
324 |
Q |
| |
|
|||||||||| |
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|
| T |
1834 |
cattggaagc |
1843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 1574 - 1688
Alignment:
| Q |
46 |
atggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgatctcaagacgcggaaatggcgca |
145 |
Q |
| |
|
||||||| |||||||||||||||||| || | | || |||||||| |||||| || || ||||| || ||||||||| | ||||| |||||||| |
|
|
| T |
1574 |
atggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtg |
1673 |
T |
|
| Q |
146 |
aaatacctaacatgt |
160 |
Q |
| |
|
||||||||||||||| |
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| T |
1674 |
aaatacctaacatgt |
1688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 3644 - 3535
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||| | |||| ||||||| | || || ||||||| |
|
|
| T |
3644 |
cacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaaaagtaaagaagtatgataaagacaacaactcttgggtcat |
3545 |
T |
|
| Q |
315 |
cattggaagc |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
3544 |
cattggaagc |
3535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 3804 - 3690
Alignment:
| Q |
46 |
atggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgatctcaagacgcggaaatggcgca |
145 |
Q |
| |
|
||||||| |||||||||||||||||| || | | || |||||||| |||||| || || ||||| || ||||||||| | ||||| |||||||| |
|
|
| T |
3804 |
atggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtg |
3705 |
T |
|
| Q |
146 |
aaatacctaacatgt |
160 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3704 |
aaatacctaacatgt |
3690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 3757 - 3648
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||| | |||| ||||||| | || || ||||||| |
|
|
| T |
3757 |
cacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaaaagtaaagaagtatgataaagacaacaactcttgggtcat |
3658 |
T |
|
| Q |
315 |
cattggaagc |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
3657 |
cattggaagc |
3648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 9839 - 9730
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||| | |||| ||||||| | || || ||||||| |
|
|
| T |
9839 |
cacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaaaagtaaagaagtatgataaagacaacaactcttgggtcat |
9740 |
T |
|
| Q |
315 |
cattggaagc |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
9739 |
cattggaagc |
9730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 35335 - 35444
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||| | |||| ||||||| | || || ||||||| |
|
|
| T |
35335 |
cacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaaaagtaaagaagtatgataaagacaacaactcttgggtcat |
35434 |
T |
|
| Q |
315 |
cattggaagc |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
35435 |
cattggaagc |
35444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 48935 - 49044
Alignment:
| Q |
215 |
cacctcctttaattgcagttgtaaaagatgtattgtacgctgctgattattcgcaacaagaagtaaaaagatatgttaaagacgaaaattcatgggtcac |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||||| |||||| |||||| ||||||| | |||| ||||||| | || || ||||||| |
|
|
| T |
48935 |
cacctcctttgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaaaagtaaagaagtatgataaagacaacaactcttgggtcat |
49034 |
T |
|
| Q |
315 |
cattggaagc |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
49035 |
cattggaagc |
49044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 3917 - 3803
Alignment:
| Q |
46 |
atggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgatctcaagacgcggaaatggcgca |
145 |
Q |
| |
|
||||||| |||||||||||||||||| || | | || |||||||| |||||| || || ||||| || ||||||||| | ||||| |||||||| |
|
|
| T |
3917 |
atggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtg |
3818 |
T |
|
| Q |
146 |
aaatacctaacatgt |
160 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3817 |
aaatacctaacatgt |
3803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 9999 - 9885
Alignment:
| Q |
46 |
atggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgatctcaagacgcggaaatggcgca |
145 |
Q |
| |
|
||||||| |||||||||||||||||| || | | || |||||||| |||||| || || ||||| || ||||||||| | ||||| |||||||| |
|
|
| T |
9999 |
atggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtggggaggagtttgatatgaagacaaaaaaatggcgtg |
9900 |
T |
|
| Q |
146 |
aaatacctaacatgt |
160 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9899 |
aaatacctaacatgt |
9885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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