View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15060_high_12 (Length: 221)
Name: NF15060_high_12
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 5034008 - 5034199
Alignment:
| Q |
12 |
caacacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034008 |
caacacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaa |
5034107 |
T |
|
| Q |
112 |
ttatatctgcctttgtatagttaatgtgtgacaagttaaactgattggccataaaaatgctatagacaaatttgaacaaatcactattattt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034108 |
ttatatctgcctttgtatagttaatgtgtgacaagttaaactcattggccataaaaatgctatagacaaatttgaacaaatcactattattt |
5034199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 5039657 - 5039848
Alignment:
| Q |
12 |
caacacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaa |
111 |
Q |
| |
|
|||||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5039657 |
caacacaggaatataacacaaatgatcaataccttgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaa |
5039756 |
T |
|
| Q |
112 |
ttatatctgcctttgtatagttaatgtgtgacaagttaaactgattggccataaaaatgctatagacaaatttgaacaaatcactattattt |
203 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
5039757 |
ttatatctgcctatgtaaagttaatgtgtgacaagttaaactcattggccataaaaatgctatatagaaatttgaacaaatcactattattt |
5039848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 25096361 - 25096449
Alignment:
| Q |
40 |
atacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgcctttgta |
128 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||| ||||||| |||||||||| ||||||||| || || |||||| |||| |||| |
|
|
| T |
25096361 |
ataccttgggaaaaattgtatccagaacctgcacagcgcgccttgtattccaaccagagtatcctcgcagaactatatccgcctatgta |
25096449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University