View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15060_high_4 (Length: 378)
Name: NF15060_high_4
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 2789750 - 2789407
Alignment:
| Q |
19 |
atcaactatattgtgttactaataacttttaatgtcaaaagagaaagaagggatagagacataagaaagtaccattttgccagcaatgaggaagaagcgc |
118 |
Q |
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| T |
2789750 |
atcaactatattgtgttactaataacttttaatgtcaaaagagaaagaagggatagagacataagaaagtaccattttgccagcaatgaggaagaagcgc |
2789651 |
T |
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| Q |
119 |
cctacgaaatgtgaatgaaagaaaggggaggggagtaatagagagaatggaaaaatgggagcaacaaatgcaatgaaaattaaggagagaaataacaaat |
218 |
Q |
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| T |
2789650 |
cctacgaaatgtgaatgaaagaaaggggaggggagtaatagagagaatggaaaaatgggagcaacaaatgcaatgaaaattaagaagagaaataacaaat |
2789551 |
T |
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| Q |
219 |
aacaaataaagatccttgttttttggagccacgagaggtggaactttgaggagactaatatagtggttaaagaatagaaactgggtgagaaattaatggg |
318 |
Q |
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| T |
2789550 |
aacaaataaagatccttgttttttggagccacgagaggtggaactttgaggagactaatatagtggttaaagaatagaaactgggtgagaaattaatggg |
2789451 |
T |
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| Q |
319 |
tgtggctgttaagattgagatctattttgcttccacaagttcat |
362 |
Q |
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| T |
2789450 |
tgtggctgttaagattgagatctattttgcttccacaagttcat |
2789407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 40865916 - 40865997
Alignment:
| Q |
215 |
aaataacaaataaagatccttgttttttggagccacgagaggtggaactttgaggagactaatatagtggttaaagaatagaa |
297 |
Q |
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| T |
40865916 |
aaataacgaatgaagatccttgttttatggagcg-cgagaggtggaactttgacaagactaagatagtagttgaagaatagaa |
40865997 |
T |
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