View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15060_high_8 (Length: 317)
Name: NF15060_high_8
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 1814582 - 1814873
Alignment:
| Q |
19 |
agttgattattatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaacattattatcat |
118 |
Q |
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| T |
1814582 |
agttgattattatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaacattattatcat |
1814681 |
T |
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| Q |
119 |
aattcctatattcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctcattgattgcttgaatttgagaaggtgaaag |
218 |
Q |
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| T |
1814682 |
aattcctatattcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctcattgattgcttgaatttgagaaggtgaaag |
1814781 |
T |
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| Q |
219 |
accaaccctagcaggaacaacactgtcattattgctattactatcactaatattaatgctattaacacccccttcagatgatgatgatgatg |
310 |
Q |
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| T |
1814782 |
accaaccctagcaggaacaacactgtcattattgctattactatcactaatgttaatgctattaacacccccttcagatgatgatgatgatg |
1814873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 1794586 - 1794751
Alignment:
| Q |
28 |
ttatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaacattattatcataattcctat |
127 |
Q |
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| T |
1794586 |
ttataatatagttcatgaatgaaccattagtctcagaatgacccgtactgaattt-ttcccattcactcaactctaaaacattattatgataattctcat |
1794684 |
T |
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| Q |
128 |
attcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctcattgat |
194 |
Q |
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| T |
1794685 |
attcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagcgtcattgat |
1794751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 1811445 - 1811607
Alignment:
| Q |
28 |
ttatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaa-cattattatcataattccta |
126 |
Q |
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||||| |||| ||||||| ||| || |||| ||| ||||||||||| || |||||||||||||||||||||||||||| ||||||| | |||| ||| | |
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| T |
1811445 |
ttataatataattcatgagtgaggcattagttccaaaatgactcataatggatttcttcccattcactcaactctaaaaacattattttgataactccca |
1811544 |
T |
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| Q |
127 |
tattcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctca |
189 |
Q |
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| T |
1811545 |
tattcatcaaattgaaatccaaaaatttgcatccacatgttaggtgaatccaaaggagcctca |
1811607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 14489242 - 14489186
Alignment:
| Q |
65 |
atgactcatactgaatttcttcccattcactcaactctaaaacattattatcataat |
121 |
Q |
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| T |
14489242 |
atgactcattctaaatttcttcccattcgctctactctaaaacattattatcataat |
14489186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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