View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15060_high_9 (Length: 289)
Name: NF15060_high_9
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 105 - 274
Target Start/End: Complemental strand, 20770449 - 20770280
Alignment:
| Q |
105 |
caaacagatcaatccattgcacgaaccaacaatcccacagcagtaacgggcatggaatcggctgtaatgatttccagtatgtgtgatgggcttcgacgta |
204 |
Q |
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| T |
20770449 |
caaatagatcaatccattgcacgaaccaacaatcccacaacagtaacgggcatggaatcggctgtaatgatttccagtacgtgtgatgggcttcgacgta |
20770350 |
T |
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| Q |
205 |
ctccccagcaaaagactcacagagatgggtgcaacggtatatgtatatccgaaatatccgttgtccatgt |
274 |
Q |
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| T |
20770349 |
ctctccagcaaaagactcacagagatgggtgcaacggtatatgtatatccgaaatatccgttgtccatgt |
20770280 |
T |
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 20770475 - 20770444
Alignment:
| Q |
1 |
aattataacgatgacagaccaaccaacaaata |
32 |
Q |
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| T |
20770475 |
aattataacgatgacagaccaaccaacaaata |
20770444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 29873938 - 29873906
Alignment:
| Q |
105 |
caaacagatcaatccattgcacgaaccaacaat |
137 |
Q |
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| T |
29873938 |
caaacagatcaatccattgcaggaaccaacaat |
29873906 |
T |
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