View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15060_low_1 (Length: 687)

Name: NF15060_low_1
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15060_low_1
NF15060_low_1
[»] chr5 (1 HSPs)
chr5 (1-650)||(43365316-43365965)


Alignment Details
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Original strand, 43365316 - 43365965
Alignment:
Q  1 actagcatgttggacacctaacttacaatgttggaaccacaaattttattaataaaattgaggcacacaattttgatgaaagcttccaattagggacctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365316 actagcatgttggacacctaacttacaatgttggaaccacaaattttattaataaaattgaggcacacaattttgatgaaagcttccaattagggacctt 43365415  T
Q  101 taatgaaacacttacacgtttcttgatcagcactggtaaaacacgaccctcgtagcatttgggggtgcatttccttggaacacgcactgtatatggagtc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365416 taattaaacacttacacgtttcttgatcagcactggtaaaacacgaccctcgtagcatttgggggtgcatttccttggaacacgcactgtatatggagtc 43365515  T
Q  201 gcaaatttctctcccatatttggtagttgctttacaactcttatgtcattccggagggatgttataaaccaatcggcatcaaataattgagaaaaattgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365516 gcaaatttctctcccatatttggtagttgctttacaactcttatgtcattccggagggatgttataaaccaatcggcatcaaataattgagaaaaattgc 43365615  T
Q  301 tgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtgttctgctaccaaagaaaatattatatgtgatttaagagacatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365616 tgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtgttctgctaccaaagaaaatattatatgtgatttaagagacatt 43365715  T
Q  401 cttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaagatgtatgatccaatgctggaataacaagagtagcattcaaaaga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365716 cttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaagatgtatgatccaatgctggaataacaagagtagcattcaaaaga 43365815  T
Q  501 taggcagccacaacagcatcaattatctgcacccacaaacaatctgtattttttcaataccagaaatattgcatccacataacattatttatcattcata 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365816 taggcagccacaacagcatcaattatctgcacccacaaacaatctgtattttttcaataccagaaatattgcatccacataacattatttatcattcata 43365915  T
Q  601 tttgtatcaccaatcattcatcaaattcgattgagaaaatcctaattgag 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43365916 tttgtatcaccaatcattcatcaaattcgattgagaaaatcctaattgag 43365965  T

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