View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15060_low_10 (Length: 242)
Name: NF15060_low_10
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_low_10 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 21837320 - 21837537
Alignment:
| Q |
18 |
acttgaaaccagatgggtaatttcgtggtcttctaaaggatttttgactcacaattcataagaaattatggtggattctagagtgagggtccaactaagt |
117 |
Q |
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| T |
21837320 |
acttgaaaccagatgggtaatttcgtggtcttctaaacgatttttgactcacaattcataagaaattatggtggattctagggtgagggtccaactaagt |
21837419 |
T |
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| Q |
118 |
tcttcacagatataccactaattttaacctttagattaaatagacccacactatttaattattcatcaccgcaccggatctttgcacgttgcatctgcac |
217 |
Q |
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| T |
21837420 |
ccctcaccggtttaccactaattttaacctttagattaaatagacccacacgatttaattattcatcaccgcactggatctttgcacgttgcatctgcac |
21837519 |
T |
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| Q |
218 |
tctaccaaatttcttctc |
235 |
Q |
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|||||||||||||||||| |
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| T |
21837520 |
tctaccaaatttcttctc |
21837537 |
T |
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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 22297016 - 22297162
Alignment:
| Q |
89 |
tggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccacactatttaattattcatcaccg |
188 |
Q |
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| T |
22297016 |
tggattctagggtgagagtccaactaagtccctcaccgatgtaccactaattttaacctttagattaaatagacccacacgatttaattattcatcaccg |
22297115 |
T |
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| Q |
189 |
caccggatctttgcacgttgcatctgcactctaccaaatttcttctc |
235 |
Q |
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| T |
22297116 |
cactggatctttgcacgttgcatctgcactctaccagatttcttctc |
22297162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 34595981 - 34595907
Alignment:
| Q |
88 |
gtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagac |
162 |
Q |
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| T |
34595981 |
gtggattctagagtgagggttcaactaaatccctcaccggtgtaccactaattttgacctttaaattaaaaagac |
34595907 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 29594906 - 29594955
Alignment:
| Q |
87 |
ggtggattctagagtgagggtccaactaagttcttcacagatataccact |
136 |
Q |
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| T |
29594906 |
ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccact |
29594955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 23257317 - 23257349
Alignment:
| Q |
85 |
atggtggattctagagtgagggtccaactaagt |
117 |
Q |
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| T |
23257317 |
atggtggattctagagtgagggtccaattaagt |
23257349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 27345968 - 27345912
Alignment:
| Q |
86 |
tggtggattctagagtgagggtccaactaagttcttcacagatataccactaatttt |
142 |
Q |
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| T |
27345968 |
tggtggattctagggtgagggttcaattaagtccctcaccgatataccacttatttt |
27345912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 9343 - 9379
Alignment:
| Q |
81 |
aattatggtggattctagagtgagggtccaactaagt |
117 |
Q |
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| T |
9343 |
aattatggtggattctagagtgaaggtccaaccaagt |
9379 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 13084927 - 13084847
Alignment:
| Q |
87 |
ggtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccaca |
167 |
Q |
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| T |
13084927 |
ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaaaagactcaca |
13084847 |
T |
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