View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15060_low_11 (Length: 237)
Name: NF15060_low_11
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 6898290 - 6898487
Alignment:
| Q |
17 |
aatatccgatcaaaagtagttatcatatttaattttagaattgcctttatataatgatgatgaatgtgtattattatttcaaaaatcttgattaatatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6898290 |
aatatccgatcaaaagtagttatcatatttaattttagaattgcctttatataatgatgatgaatgtgtattattatttcaaaaatcttgattaatatta |
6898389 |
T |
|
| Q |
117 |
tagatgacgtgtttgaagctaattaatttataagttgagaatgaataaacacctgaatgacgtctgattcattagtctgaacataaagctcccacaccat |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6898390 |
tagatgacgtgtttgaagc----taatttataagttgagaatgaataaacacctgaatgacgtatgattcattagtctgaacaaaaagctcccacaccat |
6898485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 19054844 - 19054789
Alignment:
| Q |
158 |
tgaataaacacctgaatgacgtctgattcattagtctgaacataaagctcccacac |
213 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19054844 |
tgaataaagacctgaatggcatctgattcattagtctgaacagaaagctcccacac |
19054789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 19191950 - 19192002
Alignment:
| Q |
158 |
tgaataaacacctgaatgacgtctgattcattagtctgaacataaagctccca |
210 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
19191950 |
tgaataaagacctgaattgcgtctgattcattagtttgaacagaaagctccca |
19192002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University