View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15060_low_2 (Length: 492)
Name: NF15060_low_2
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Complemental strand, 40377921 - 40377462
Alignment:
| Q |
11 |
taatactcaatctctgaatattcattcattaacttttgtgcattgaaagaatgcgacctctcggttcatataccaaattatattttgggatatcggtgta |
110 |
Q |
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| T |
40377921 |
taatactcaatctctgaatattcattca----cttttgtgcattgaaagaatgcgacctctcggttcatataccaaattatattttgggatatcggtgta |
40377826 |
T |
|
| Q |
111 |
catacgcggagtattgaagaccatatacnnnnnnnnaaggcaaatttattgataaagatcaaattatctttctgatcgattaaaaacccaataaagtaag |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40377825 |
catacgcggagtattgaagaccatatacttttttttaaggcaaatttattaataaagatcaaattatctttctgatcgactaaaaacccaataaagtaag |
40377726 |
T |
|
| Q |
211 |
gtcaattacgccaaaatccaagacaaacaaggcaaaacaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccaagtctgcctc |
310 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40377725 |
gttaattacgccaaaatccaagacaaacaaggcaaaacaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccatgtctgcctc |
40377626 |
T |
|
| Q |
311 |
ttaagatcgtgtcgcacttcgcaaggaccattagcgctctcaacgtctgtagaagggtgattcaacatcgccctcaaattatacttcacgtttaccactt |
410 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40377625 |
ttaatatcgtgtcacacttcgcaaggaccattagcgctctcaacgtctgtataagggtgattcaacatcgccctcaaattatacttcacgtttaccactt |
40377526 |
T |
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| Q |
411 |
tctgcacataaccacctctttcggtcactaacttaacgttggagtgccaatgtatcttccaact |
474 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40377525 |
tctgcacataaccacctctttcagtcactaacttaacgttggagtgccaatgtatcttccaact |
40377462 |
T |
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