View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15060_low_6 (Length: 335)
Name: NF15060_low_6
Description: NF15060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15060_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 43068903 - 43069238
Alignment:
| Q |
10 |
atgaactatcagaacttatgaaccatctccctttgaagtaagcaatat----ttctcatgcatgatgcattt---------------------ttatatt |
84 |
Q |
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| T |
43068903 |
atgaactatcagaacttatgaaccatctccctttgaagtaagcaatatatatttctcatgcatgatgcattttttttgctatatatataatttttatatt |
43069002 |
T |
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| Q |
85 |
ctatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatct |
184 |
Q |
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| T |
43069003 |
ctatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatct |
43069102 |
T |
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| Q |
185 |
tttggttctttagctagagtgcagagtgtagaagatctttctaagaaattagagagaccaaattacagaaacaaaaagaaatcatgcaaaagctttggcc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069103 |
tttggttctttagctagagtgcagagtgtagaagatctttctaagaaattagagagaccaaattacagaaacaaaaagaaatcatgcaaaagctttggcc |
43069202 |
T |
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| Q |
285 |
ggtacttgtgcactccaaaggcaacaatatcaaaaa |
320 |
Q |
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| T |
43069203 |
ggtacttgtgcactccaaaggcaacaatatcaaaaa |
43069238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 34038268 - 34038218
Alignment:
| Q |
133 |
tgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatc |
183 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
34038268 |
tgacttttgcaggagagggttgtcaatgttttatcaagggaaggctcaatc |
34038218 |
T |
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