View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15061_high_8 (Length: 219)

Name: NF15061_high_8
Description: NF15061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15061_high_8
NF15061_high_8
[»] chr7 (1 HSPs)
chr7 (1-219)||(43530864-43531082)
[»] chr1 (2 HSPs)
chr1 (6-219)||(24146637-24146850)
chr1 (6-218)||(24128674-24128886)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 43530864 - 43531082
Alignment:
Q  1 gcatagcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43530864 gcatagcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaa 43530963  T
Q  101 ctaggaggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagttctagccacaaagtatgcacttaatctgtacatatctgatgctctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43530964 ctaggaggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagttctagccacaaagtatgcacttaatctgtacatatctgatgctctttc 43531063  T
Q  201 cttattcaacatggctctc 219  Q
    |||||||||||||||||||    
T  43531064 cttattcaacatggctctc 43531082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 24146850 - 24146637
Alignment:
Q  6 gcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactagg 105  Q
    |||||||||||||||||  |||||||| ||||| ||||||||  | || ||||||||  | ||||| |||||||||||||||||||| |||||||| ||     
T  24146850 gcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgagaaaaaaggaggcagcacttagtctcagaccagccatgaagtaaacaacaagt 24146751  T
Q  106 aggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagttctagccacaaagtatgcacttaatctgtacatatctgatgctctttccttat 205  Q
    || |||||||| | |||||  ||||||| |||||| || || || |||||||| |  |||||||| ||||||||||||||||||| ||| | ||||||||    
T  24146750 agaaaaagcactgataatatcaggtctaatggaaggtcgctcgttgttctagcaaggaagtatgcgcttaatctgtacatatctgctgcacgttccttat 24146651  T
Q  206 tcaacatggctctc 219  Q
    ||||||| ||||||    
T  24146650 tcaacattgctctc 24146637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 24128886 - 24128674
Alignment:
Q  6 gcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactagg 105  Q
    |||||||||||||||||  |||||||| ||||| ||||||||  | ||||||||||   | ||||| ||||| |||||||||||||| |||||||| |||    
T  24128886 gcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgaggaaaaagggagcagcacttagtcttagaccagccatgaagtaaacaacaagg 24128787  T
Q  106 aggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagttctagccacaaagtatgcacttaatctgtacatatctgatgctctttccttat 205  Q
    || |||||||| |||||||  ||||||| |||||| || || || |||||||| |  |||||||| ||||||||||||||||||| ||| | ||| ||||    
T  24128786 agaaaaagcactggtaatatcaggtctaatggaaggtcgctcgttgttctagcaaggaagtatgcgcttaatctgtacatatctgctgcacgttctttat 24128687  T
Q  206 tcaacatggctct 218  Q
    | |||||||||||    
T  24128686 ttaacatggctct 24128674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University