View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15061_low_1 (Length: 485)

Name: NF15061_low_1
Description: NF15061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15061_low_1
NF15061_low_1
[»] chr2 (8 HSPs)
chr2 (18-458)||(23864231-23864671)
chr2 (49-207)||(22788500-22788661)
chr2 (63-192)||(20571179-20571305)
chr2 (57-136)||(23757196-23757275)
chr2 (63-171)||(22626052-22626157)
chr2 (63-136)||(23756217-23756290)
chr2 (68-130)||(23840588-23840650)
chr2 (100-136)||(22723447-22723483)
[»] chr6 (3 HSPs)
chr6 (49-207)||(25779312-25779473)
chr6 (72-132)||(25741726-25741786)
chr6 (72-132)||(25747637-25747697)
[»] scaffold0624 (1 HSPs)
scaffold0624 (94-136)||(3822-3864)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 23864671 - 23864231
Alignment:
Q  18 caaaaggtggtccgtagttgagaccaccaactgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864671 caaaaggtggtccgtagttgagaccaccaactgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctt 23864572  T
Q  118 tggacttcctgcaatattgaagatgatagtgataactgcaagaaacaaaactagaacggacagataatgagacatttttccagcctttttaattatgact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23864571 tggacttcctgcaatattgaagatgatagtgataactgcaagaaacaaaactagaacggacagataatgagacattttttcagcctttttaattatgact 23864472  T
Q  218 attggtatacctcctattttgnnnnnnnatcataagatagtgtgtataccaccttttgtgcggattattgcgtatatatacaacatagtcacctaattat 317  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864471 attggtatacctcctattttgtttttttatcataagatagtgtgtataccaccttttgtgcggattattgcgtatatatacaacatagtcacctaattat 23864372  T
Q  318 tttgatccagtcaaataagacatgtttggtaaacaaccttaaagtactaattatatacatttcttagctgctatttatgtatggatgacttaatannnnn 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          
T  23864371 tttgatccagtcaaataagacatgtttggtaaacaaccttaaagtactaattatatacatttcttagctgctatttatgtatggatgacttcattttttt 23864272  T
Q  418 nncatttgagcacttcaaatcaattggaggaagcctgcata 458  Q
      ||||||| ||||||||||||||||||||||||| |||||    
T  23864271 ttcatttgaacacttcaaatcaattggaggaagccagcata 23864231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 22788661 - 22788500
Alignment:
Q  49 tgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtg 148  Q
    ||||||| ||| ||||||||||| | ||| ||||||||| ||| |||||||||| |||||||| ||||||||| ||||||||||||||  ||||||||||    
T  22788661 tgtttctggatcaattgttggtgaccggttaatgatcggcccaacgggttgcgcgtgtatttggtgctttggatttcctgcaatattggtgatgatagtg 22788562  T
Q  149 ataactgcaagaaacaaaactagaacggaca---gataatgagacatttttccagccttttt 207  Q
     |||||||||||||||||||||  ||||| |    ||||| |||||||||||||||||||||    
T  22788561 ttaactgcaagaaacaaaactaacacggataagttataataagacatttttccagccttttt 22788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 20571179 - 20571305
Alignment:
Q  63 ttgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtgataactgcaagaaa 162  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||   | | | |||||||| |||||||||    
T  20571179 ttgttggtggctggtaaatgatcggtccatcggtttgggcatgtatttgatgctttggattccctgcaatatt---ggtaagagtgataattgcaagaaa 20571275  T
Q  163 caaaactagaacggacagataatgagacat 192  Q
    ||||||||| ||||| | || |||||||||    
T  20571276 caaaactagcacggataaatgatgagacat 20571305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 23757275 - 23757196
Alignment:
Q  57 gatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattg 136  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||  |||||| | ||||||||||||    
T  23757275 gatgagttgttggtggctggtaaatgatcggtccatcggtttgggcatgtatttgataatttggattccctgcaatattg 23757196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 22626157 - 22626052
Alignment:
Q  63 ttgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtgataactgcaagaaa 162  Q
    |||||||| ||||||| ||||| |||||||||| ||| ||||||||||||| ||||||| |||||||||||||  || | | ||| |||| |||||||||    
T  22626157 ttgttggttgctggtagatgattggtccatcggtttgggcatgtatttgatactttggatttcctgcaatatt--ag-taagagtaataattgcaagaaa 22626061  T
Q  163 caaaactag 171  Q
    |||||||||    
T  22626060 caaaactag 22626052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 23756290 - 23756217
Alignment:
Q  63 ttgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattg 136  Q
    |||| |||||||||||||| ||||||||||||| | | ||||||||||||  ||||||| | ||||||||||||    
T  23756290 ttgtaggtggctggtaaataatcggtccatcggttggagcatgtatttgacactttggattccctgcaatattg 23756217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 23840588 - 23840650
Alignment:
Q  68 ggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgca 130  Q
    |||||||||||| ||||| | |||| |||||||||||||  ||||||||||||| | ||||||    
T  23840588 ggtggctggtaactgatcagaccattgggttgcgcatgtcgttgatgctttggattccctgca 23840650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 22723483 - 22723447
Alignment:
Q  100 cgcatgtatttgatgctttggacttcctgcaatattg 136  Q
    |||||||||||||||||||||| |||||| |||||||    
T  22723483 cgcatgtatttgatgctttggatttcctgtaatattg 22723447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 25779312 - 25779473
Alignment:
Q  49 tgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtg 148  Q
    ||||||| ||| ||||||||||| | ||| ||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||    
T  25779312 tgtttctggatcaattgttggtgaccggttaatgatcggcccaacgggttgcgcgtgtatttgatgctttggatttcctgcaatattggtgatgatagtg 25779411  T
Q  149 ataactgcaagaaacaaaactagaacggaca---gataatgagacatttttccagccttttt 207  Q
     |||||||||||||||||||||  ||||| |    ||||| |||||||||||||||||||||    
T  25779412 ttaactgcaagaaacaaaactaacacggataagttataataagacatttttccagccttttt 25779473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 25741786 - 25741726
Alignment:
Q  72 gctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaat 132  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||| |||||| ||||||||||    
T  25741786 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 25741726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 25747697 - 25747637
Alignment:
Q  72 gctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaat 132  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||| |||||| ||||||||||    
T  25747697 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 25747637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0624 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 3864 - 3822
Alignment:
Q  94 gggttgcgcatgtatttgatgctttggacttcctgcaatattg 136  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  3864 gggttgcgcatgtatttgatgctttggatttcctgtaatattg 3822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University