View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15061_low_2 (Length: 412)
Name: NF15061_low_2
Description: NF15061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15061_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 35187997 - 35187689
Alignment:
| Q |
17 |
atttgaataaatgaataattttgtattcgactccttgattgagtcttaattaattttgtactattttaaaggatcctacattcttatttagggtgacaat |
116 |
Q |
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| T |
35187997 |
atttgaataaatgaataattttgtattcgactccttgattgagtcttaattaattttgtactattttaaaggatcctacattcttatttagggtgacaat |
35187898 |
T |
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| Q |
117 |
gtgtgtttttgtgagtcttataatgcttattactaaataataactactaatattatgtgtcacatctaatatgattatgagatttgcttttaattaactc |
216 |
Q |
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| T |
35187897 |
gtgtgtttttgtgagtcttataatgcttattactaaataataactacaaatattatgtgtcacatctaatatgattatgagatttgcttttaattaactc |
35187798 |
T |
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| Q |
217 |
aatatgtggaaaaaagaagggctgactttcaattgcaatttgattttgtagttatcaattgatttattttgaaaccatttattagtgttttgtatatcga |
316 |
Q |
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| T |
35187797 |
aatatgtggaaaaaagaagggctgactttcaattgcaatttgattttgtagttatcaattgatttattttgaaaccatttattagtg-tttgtatatcga |
35187699 |
T |
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| Q |
317 |
tattacatcc |
326 |
Q |
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| T |
35187698 |
tattacatcc |
35187689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 323 - 411
Target Start/End: Complemental strand, 35187268 - 35187180
Alignment:
| Q |
323 |
atcctctcctgtccagattaacacttatgaatgttatgagaaaacaaattaattggtcttgaaatggttttacttgtttttattcttct |
411 |
Q |
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| T |
35187268 |
atcctctcctgttcagattaacacttatgaatgttatgagaaaacaaattaattggtcttgaaatggttttacttgtttttattcttct |
35187180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 176 - 306
Target Start/End: Original strand, 1732177 - 1732306
Alignment:
| Q |
176 |
tcacatctaatatgattatgagatttgcttttaattaactcaatatgtggaaaaaagaagggctgactttcaattgcaatttgattttgtagttatcaat |
275 |
Q |
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|||| ||||||||||| ||||| || |||||||||||| ||||||||| ||||| |||| ||||||||||| | |||||| ||||||||| |||| | |
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| T |
1732177 |
tcacttctaatatgat-atgagtttagcttttaattaatgcaatatgtgtgaaaaatgagggttgactttcaatagaaatttgtttttgtagtcatcagt |
1732275 |
T |
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| Q |
276 |
tgatttattttgaaaccatttattagtgttt |
306 |
Q |
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| T |
1732276 |
tgattgattttgaaaccatttattagtgttt |
1732306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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