View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15061_low_6 (Length: 296)
Name: NF15061_low_6
Description: NF15061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15061_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 39 - 281
Target Start/End: Original strand, 8336921 - 8337163
Alignment:
| Q |
39 |
tgtgtgtcatgaatataactttggtgagtgaacttactaactaataggtcaggtcgccatttgccgaaaactatttcagcaaaaggcttatacttgatgt |
138 |
Q |
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| T |
8336921 |
tgtgagtcatgaatataactttggtgagtgaacttactaaataataggtcaggtcgccattttccgaaaactatttcagcaaaaggcttatacttgatgt |
8337020 |
T |
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| Q |
139 |
gcgtattagggatgtcattgaggttgacatcaatagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcatt |
238 |
Q |
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| T |
8337021 |
gcgtattagggatgtcattgaggttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcatt |
8337120 |
T |
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| Q |
239 |
cttgaccacttgaaagttagttaaggtatatgtagaattaact |
281 |
Q |
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| T |
8337121 |
cttgagcacttgaaagttagttaaggtatatgtagaattaact |
8337163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 46 - 281
Target Start/End: Original strand, 10234044 - 10234279
Alignment:
| Q |
46 |
catgaatataactttggtgagtgaacttactaactaataggtcaggtcgccatttgccgaaaactatttcagcaaaaggcttatacttgatgtgcgtatt |
145 |
Q |
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| T |
10234044 |
catgaatataactttggtgagtgaacttactaactaataggtcaggtcgccatttgctggaaactatttcagcaaaaggcttatacttgatgtgcgtatt |
10234143 |
T |
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| Q |
146 |
agggatgtcattgaggttgacatcaatagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgacc |
245 |
Q |
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| T |
10234144 |
agagatgtcattgaggttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgacc |
10234243 |
T |
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| Q |
246 |
acttgaaagttagttaaggtatatgtagaattaact |
281 |
Q |
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| T |
10234244 |
acatgaaagttagttaaggtatatgtagaattaact |
10234279 |
T |
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