View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15061_low_7 (Length: 256)
Name: NF15061_low_7
Description: NF15061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15061_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 28495383 - 28495610
Alignment:
| Q |
11 |
cacagaacccaaccaaaaaggaacaaaatcatgcaaaatccaatcagcattagaagattcaaggaaatgagtgaaaggtttttcaagtttgtcaaaggca |
110 |
Q |
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| T |
28495383 |
cacagaacccaaccaaaaaggaacaaaatcatgcaaaatccaatcagcattagaagattgaaggaaatgagttaaaggttgttcaagtttgtcaaaggca |
28495482 |
T |
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| Q |
111 |
tttttcaggtgtggtacaacgtcataaggaatatctgtagtagcctctgcattttcaggaaggttatcaacttttggcaatggaaggctcacaaatttga |
210 |
Q |
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| T |
28495483 |
tttttcaggtgtggtacaacgtcataaggaatatctgtagtagcctctgcattttcaggaaggttatcaacttttggcaatggaaggctcacaaatttga |
28495582 |
T |
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| Q |
211 |
tgagaggaacaacatttggtggtagttt |
238 |
Q |
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| T |
28495583 |
tgagaggagcaacatttggtggtagttt |
28495610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 28507949 - 28508153
Alignment:
| Q |
34 |
caaaatcatgcaaaatccaatcagcattagaagattcaaggaaatgagtgaaaggtttttcaagtttgtcaaaggcatttttcaggtgtggtacaacgtc |
133 |
Q |
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| T |
28507949 |
caaaatcatgaaaaatccaaccagcattagaagtttcaaggaaatgggtgaaaggtttttcaagtttgtcaaaggcatttttaaggtatggtacgacatc |
28508048 |
T |
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| Q |
134 |
ataaggaatatctgtagtagcctctgcattttcaggaaggttatcaacttttggcaatggaaggctcacaaatttgatgagaggaacaacatttggtggt |
233 |
Q |
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| T |
28508049 |
ataaggaatgtctgtagtagcctctgcgttttcaggaaggttatcaacttttggcaatggaaggtttacaaatttgatgagaggagcaacatttggtggt |
28508148 |
T |
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| Q |
234 |
agttt |
238 |
Q |
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||||| |
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| T |
28508149 |
agttt |
28508153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 28492064 - 28492290
Alignment:
| Q |
11 |
cacagaacccaaccaaaaaggaacaaaatcatgcaaaatccaatcagcattagaagattcaaggaaatgagtgaaaggtttttcaagtttgtcaaaggca |
110 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||| || ||||||| ||| || |||||||| ||| |
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| T |
28492064 |
cacaggacccaaccaaaaaggagcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaaaggttgttccagcttgtcaaatgca |
28492163 |
T |
|
| Q |
111 |
tttttcaggtgtggtacaacgtcataaggaatatctgtagtagcctctgcattttcaggaaggttatcaacttttggcaatggaaggctcacaaatttga |
210 |
Q |
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| T |
28492164 |
tctttaaggtattgaaatacatcccatgagacatctgtagtggcctctgcattttctggaagattatcaactttaggcattggaagactcacaaatttga |
28492263 |
T |
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| Q |
211 |
tgagaggaacaacatttggtggtagtt |
237 |
Q |
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|||||||| |||| ||||||||||||| |
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| T |
28492264 |
tgagaggagcaacgtttggtggtagtt |
28492290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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