View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_13 (Length: 383)
Name: NF15062_high_13
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 40 - 378
Target Start/End: Original strand, 44379361 - 44379699
Alignment:
| Q |
40 |
aataagccaattcaaacggggcctatgtatctctataaaatttattgaattacattgtttaaatatttatcagaataacttgtgtatacagagtttgata |
139 |
Q |
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| T |
44379361 |
aataagtcaatccaaacagggcctatgtatctctataaaatttattgaatcacattgtttaaatatttatcagaataacttgtgtatatagagtttaata |
44379460 |
T |
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| Q |
140 |
gccagccccgagtcactcctttcaaattttcttgagttgggaggatggttctaaaataaatttggctcttactttcaaattgtttgaagtttaaaggaaa |
239 |
Q |
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| T |
44379461 |
gccagccccaagtcactcctttcaaattttcttgagttgggaggatggttctaaaataaatttggctcttactttcaaattgtttgaagtttaaaggaaa |
44379560 |
T |
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| Q |
240 |
gttatatattcaattaaacaccctttctttctaaatcccaaagtttgtaatagaacccgaataagaacttctatcagtgtacaaactttttgagtttgga |
339 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44379561 |
cttatatattcaattaaacaccctttctttctaaatccaaaaatttgtaatagaacccgaacaagaacttctatcagtgtacaaactttttgagtttgga |
44379660 |
T |
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| Q |
340 |
gtacaacataatcaagtaacagacatttcctttgcttct |
378 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| |
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| T |
44379661 |
gtacaacacaatcaagtaacagacatttcctttggttct |
44379699 |
T |
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