View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15062_high_14 (Length: 369)
Name: NF15062_high_14
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 26170190 - 26169840
Alignment:
| Q |
20 |
taaagagcagaattcgcttattttaggacattggaagcaaaacaaaattcnnnnnnnaatatatgttttagtctctaagtgaatattagtgcataaataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
26170190 |
taaagagcagaattcgcttattttaggacattggaagcaaaacaaaattctttttttaatatttgttttagtctctaactaaatattagtacataaataa |
26170091 |
T |
|
| Q |
120 |
atgttagtgattattaatatgttannnnnnnng-gtagtcattattaatatgttattgtttgcatgggaatcaaatccaaggtctct----ttgcaagct |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26170090 |
atgttagtgattattaatatgtttttttttttttgtagtcattattaatatgttattgtttgcatgggaatcaaatccaaggtctctagctttgcaagct |
26169991 |
T |
|
| Q |
215 |
gt--ctttgttagagataagttaggt-----------cagatttgttccttttttagagggttt-ggcctagtccccctcctctttatttccttttgtct |
300 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||| || |||||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
26169990 |
gtgtctttgttagagataagttaggttggcctaacttcagatttgttcctttttgagggggttttggcctaatccccctcctctttgtttccttttgtct |
26169891 |
T |
|
| Q |
301 |
tgtttaatatattgggtgggagcagctcttattgctccacttttttgctat |
351 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26169890 |
tgtttaatatattgggtggtagcagctcttattgctccacttttttgctat |
26169840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 19201915 - 19201991
Alignment:
| Q |
274 |
ccccctcctctttatttccttttgtcttgtttaatatattgggtgggagcagctcttattgctccacttttttgcta |
350 |
Q |
| |
|
||||||||||||| || |||||||| | |||| || |||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
19201915 |
ccccctcctctttgttcccttttgtttcgttttatttattgggtggtagcagctctttttgctccacttttctgcta |
19201991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 24355437 - 24355393
Alignment:
| Q |
243 |
tttgttccttttttagagggttt-ggcctagtccccctcctcttt |
286 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
24355437 |
tttgttcctttttgagggggttttggcctagtccccctcctcttt |
24355393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University