View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_2 (Length: 535)
Name: NF15062_high_2
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 35478665 - 35478437
Alignment:
| Q |
18 |
atattagtcatgtgaaacacacctctttttaattttacacttcccccacaaatcatcaatgttccaactttgtcccacatgctcccacaannnnnnnnnn |
117 |
Q |
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| T |
35478665 |
atattagtcatatgaaacacacctctttttaattttacacttcccccacaaatcatcaatgttccaactttgtcccacatgctcccacaattttttgttt |
35478566 |
T |
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| Q |
118 |
nnnnaaagtaaataatttatgttaaaatcaaagaaaaaataataacataacaattaacgtattaatatttgacattttaaacaaacaagaatagagttac |
217 |
Q |
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| T |
35478565 |
ttttaaagtaaataatttatgttaaaataaaagaaaaaataataacataacaattaacgtattaatatttgacattttaaacaaataagaatagagttac |
35478466 |
T |
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| Q |
218 |
accaacataggaggtgaaccggtgtgcat |
246 |
Q |
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| T |
35478465 |
accaacataggaggtgaaccggtgagcat |
35478437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 238 - 485
Target Start/End: Complemental strand, 35477724 - 35477483
Alignment:
| Q |
238 |
ggtgtgcatgctcagttctactcactaatcacatgttggtatgtttcctctcatatatgataatatggtttccttttcttaatatggtttcatatttaat |
337 |
Q |
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| T |
35477724 |
ggtgagcatgctcagttctactcactaatcagatgttggtatttttcctctcatatatg---atatggtttcctttttttaatatggtttcatatttaat |
35477628 |
T |
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| Q |
338 |
aaacaaaacaacnnnnnnngttgacaaaaacagtgttttctttgtcgaaaacaatgtaaattatttaccatgaaaaagagttcatggtaattatatattt |
437 |
Q |
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| T |
35477627 |
aaacaaaacaactttttttgttgacaaaaacagtgttttctttgtcgaaaacaatgt---tttcttaaaatgaaaaagagttcatggtaattatatattt |
35477531 |
T |
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| Q |
438 |
gatatgcctttaatcctcttatgatatgcctttaatcctattattgtc |
485 |
Q |
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| T |
35477530 |
gatatgcctttaatcctcttatgatatgcctttaatcctattattgtc |
35477483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 485 - 526
Target Start/End: Complemental strand, 35477454 - 35477413
Alignment:
| Q |
485 |
caaaggaaaataaatttgaggaccgatataatgcccctatgc |
526 |
Q |
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| T |
35477454 |
caaaggaaaagaaatttgaggaccgatataatgcccctatgc |
35477413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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