View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_29 (Length: 237)
Name: NF15062_high_29
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_29 |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8395913 - 8396133
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8395913 |
ctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
8396012 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaaaatattctaagacatataaatcatttaattcattttttaatgtgttattctttcattctttgtagttacctgactttatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8396013 |
tagatgaatttgcaagcaaaatattctaagacatataaattatttaattcattttttaatgtgttattctttcattctttgtagttacctgactttatag |
8396112 |
T |
|
| Q |
201 |
aaaagaaaatttgtttagatc |
221 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
8396113 |
aaaagaaactttgtttagatc |
8396133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 8405659 - 8405451
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8405659 |
ctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
8405560 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaaaatattctaagacatataaatcatttaattcattttttaatgtgttattctttcattctttgt-agttacctgactttata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |
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| T |
8405559 |
tagatgaatttgcaagcaaaatattctaagacatataaattatttaattcattttttaatgtgttattctttcattctttgtaagttacatgactttgta |
8405460 |
T |
|
| Q |
200 |
gaaaagaaa |
208 |
Q |
| |
|
||||||||| |
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|
| T |
8405459 |
gaaaagaaa |
8405451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8430930 - 8430796
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8430930 |
ctatttgaaatgaagatggctttgcaattgggaaaaagtgtatcagagctaagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
8430831 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaaaatattctaagacata |
135 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||| |
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|
| T |
8430830 |
tagatgaattttccagcaaaattttctaagacata |
8430796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8376227 - 8376345
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | || | |
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|
| T |
8376227 |
ctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaa |
8376326 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaa |
119 |
Q |
| |
|
| ||||||||||| ||||| |
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|
| T |
8376327 |
ttgatgaatttgccagcaa |
8376345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 8416863 - 8416753
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||| |
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| T |
8416863 |
ctatttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcgcatcgaaggtgttgaca |
8416764 |
T |
|
| Q |
101 |
tagatgaattt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
8416763 |
tagatgaattt |
8416753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 8411779 - 8411661
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| || | || | |
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|
| T |
8411779 |
ctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaatcagcttcttgtcgcatggaaagtatcgaaa |
8411680 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaa |
119 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
8411679 |
tagatgaatttgccagcaa |
8411661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 8433877 - 8433759
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| || | || | |
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| T |
8433877 |
ctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaatcagcttcttgtcgcatggaaagtatcgaaa |
8433778 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaa |
119 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
8433777 |
tagatgaatttgccagcaa |
8433759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 59 - 177
Alignment:
| Q |
1 |
ctatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
59 |
ctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttgtcgcatcgaaggtgttgaca |
158 |
T |
|
| Q |
101 |
tagatgaatttgcaagcaa |
119 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
159 |
tagatgaatttgccagcaa |
177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 55330585 - 55330474
Alignment:
| Q |
2 |
tatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacat |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| || ||| |||| || ||||| |||||||||| ||||| ||| ||| |||| |||| | |
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|
| T |
55330585 |
tatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatcaggttcttgtcgaatgaaaggaattgatgt |
55330486 |
T |
|
| Q |
102 |
agatgaatttgc |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
55330485 |
tgatgaatttgc |
55330474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 55336017 - 55335899
Alignment:
| Q |
2 |
tatttgaaatgaaaatggctttgcgattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacat |
101 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||| || ||||| || ||||||| |||||||| ||| | | | |||||||||| || || |
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|
| T |
55336017 |
tatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaaaatctgctgcctgttgcatggaaggaatttctat |
55335918 |
T |
|
| Q |
102 |
agatgaatttgcaagcaaa |
120 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
55335917 |
agatgaatttgccagcaaa |
55335899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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