View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_30 (Length: 231)
Name: NF15062_high_30
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 45209501 - 45209321
Alignment:
| Q |
36 |
aaaaatgtattcatgaaaaattgtcaattgagaaaacatcttgtttataagtcagcattatgagaaacatatttgtaaaaagaagaattacataaattgt |
135 |
Q |
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| T |
45209501 |
aaaaatatattcatgaaaaattgtcaattgagaaaacatcttgtttataagtcagcattatgagaaacatatttgtaaaaagaagaattacataaattgt |
45209402 |
T |
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| Q |
136 |
cagaggcaaggcaggtgtagtaaatttgtaaaactcttatagctacagtccctataacttgcctatcgacgacattaaattt |
217 |
Q |
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| T |
45209401 |
cagaggcaaggcaggtgtagtaaatttgtaaaactcttatagctacagt-cctataacttgcctatcgacgacattaaattt |
45209321 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 27749522 - 27749480
Alignment:
| Q |
11 |
tcgaagaatatattcatgatcacccaaaaatgtattcatgaaa |
53 |
Q |
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| T |
27749522 |
tcgaaaaatatctttatgatcacccaaaaatgtattcatgaaa |
27749480 |
T |
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