View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_34 (Length: 223)
Name: NF15062_high_34
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 39190488 - 39190297
Alignment:
| Q |
15 |
taattctcatttcattatcatctttttctctttccaattgaaaatgtttttggaattgaaaaattcaagttttgaggatatatgtagatgatgatcttgt |
114 |
Q |
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| T |
39190488 |
taattctcatttcattatcatcttattcgctttccaatagaaaatgtttt-ggaattgaaaaattcaagttttgaggatatatgtagatgatgatcttgt |
39190390 |
T |
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| Q |
115 |
ttataaatcacactgttaccacttttaatcattgtaaacaaaaagttatattggtaccaatttttgtttgtaacaatattagggtcaaagctg |
207 |
Q |
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| T |
39190389 |
ttataaatcacactgttaccacttttaatcattgtaaacaaaaagttacattggtaccgatttttgtttgtaacaatattagggtcaaagctg |
39190297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 41259715 - 41259903
Alignment:
| Q |
15 |
taattctcatttcattatcatctttttctctttccaattgaaaatgtttttggaattgaaaaattcaagttttgaggatatatgtagatgatgatcttgt |
114 |
Q |
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| T |
41259715 |
taattttcatttcattatcatcttattctctttccaatcaaaaaatgttttggaattggaaaattcaagttttgaagacata-gta---gatgatcttat |
41259810 |
T |
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| Q |
115 |
ttataaat--cacactgttaccacttttaatcattgtaaacaaaaagttatattggtaccaatttttgtttgtaacaatattagggtcaaagct |
206 |
Q |
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| T |
41259811 |
ttataaatcacacactgttaccactttgaatcattgtaaa-aaataattatattgttaacaatttttttttgtaacaatattagggtcaaagct |
41259903 |
T |
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